View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14098_low_12 (Length: 378)

Name: NF14098_low_12
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14098_low_12
NF14098_low_12
[»] chr8 (4 HSPs)
chr8 (141-368)||(18035345-18035572)
chr8 (143-368)||(18021118-18021342)
chr8 (24-98)||(18035101-18035175)
chr8 (32-73)||(9632164-9632205)
[»] chr7 (8 HSPs)
chr7 (24-73)||(4131715-4131764)
chr7 (29-94)||(35570245-35570310)
chr7 (24-94)||(27045599-27045669)
chr7 (24-72)||(5529012-5529060)
chr7 (28-62)||(6766773-6766807)
chr7 (28-98)||(16778510-16778580)
chr7 (24-64)||(42662188-42662228)
chr7 (18-58)||(47096275-47096315)
[»] chr1 (1 HSPs)
chr1 (29-73)||(15382638-15382682)
[»] chr6 (2 HSPs)
chr6 (29-76)||(31869714-31869761)
chr6 (33-98)||(29790216-29790281)
[»] chr3 (5 HSPs)
chr3 (33-73)||(41252975-41253015)
chr3 (30-94)||(22516026-22516090)
chr3 (33-73)||(15333018-15333058)
chr3 (26-90)||(22782269-22782333)
chr3 (26-90)||(22786633-22786697)
[»] chr4 (3 HSPs)
chr4 (32-73)||(19897648-19897689)
chr4 (29-73)||(30191680-30191724)
chr4 (30-94)||(5428585-5428649)
[»] chr5 (2 HSPs)
chr5 (30-94)||(24916439-24916503)
chr5 (28-94)||(24992329-24992395)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 141 - 368
Target Start/End: Original strand, 18035345 - 18035572
Alignment:
Q  141 taaaacagatggagtatctatagcaacgctctttttgcagtcactaaaagcgtttgttgctatatggctaatttcttgtagcgaacgataagctctttac 240  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18035345 taaaacggatggagtatctatagcaacgctttttttgcagtcactaaaagcgtttgttgctatatggctaatttcttgtagtgaacgataagctctttac 18035444  T
Q  241 gagcggcattttcttaaagttcctattaaactatgacttaccaagggttcgacttaattcatcacaaaacttgaagtttcatgcaaaatacaagttctat 340  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18035445 gagcagcattttcttaaagttcctattaaactatgacttaccaagggttcaacttaattcatcacaaaacttgaagtttcatgcaaaatacaagttctat 18035544  T
Q  341 atgagcattacgctctcccggacctttg 368  Q
    | ||||||||||||||||||||||||||    
T  18035545 acgagcattacgctctcccggacctttg 18035572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 143 - 368
Target Start/End: Original strand, 18021118 - 18021342
Alignment:
Q  143 aaacagatggagtatctatagcaacgctctttttgcagtcactaaaagcgtttgttgctatatggctaatttcttgtagcgaacgataagctctttacga 242  Q
    |||| ||||||||||||||||||||||| ||||| || |||||| | || | | ||||||||||   |||||| ||||| |||||||||||| ||||| |    
T  18021118 aaacggatggagtatctatagcaacgct-tttttacaatcactagaggcttctcttgctatatgaaaaatttcatgtagtgaacgataagctttttacaa 18021216  T
Q  243 gcggcattttcttaaagttcctattaaactatgacttaccaagggttcgacttaattcatcacaaaacttgaagtttcatgcaaaatacaagttctatat 342  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||||||||     
T  18021217 gcggcattttcttaaagttcctatcaaactacgacttaccaagggttcgatttaattcatcacaaaacttaatgtttcatgcaaactacaagttctatac 18021316  T
Q  343 gagcattacgctctcccggacctttg 368  Q
    |||||||||||||||||| |||||||    
T  18021317 gagcattacgctctcccgtacctttg 18021342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 18035101 - 18035175
Alignment:
Q  24 acttcctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccataattt 98  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||    
T  18035101 acttcctccttttcaaaatatatgtcgcaattttacaatgtacattattcgcacggcgtacattgaccataattt 18035175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 9632164 - 9632205
Alignment:
Q  32 cgtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  9632164 cgtttcaaaatacatgtcgcaattttacaatgtgtactattc 9632205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 4131764 - 4131715
Alignment:
Q  24 acttcctccgtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  4131764 acttcatccgtttcaaaatatatgtcgcaattttacaatgtatactattc 4131715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 35570310 - 35570245
Alignment:
Q  29 ctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccata 94  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| |||  ||||| |||||||||    
T  35570310 ctccgtttcaaaatacatgtcgcaattttacaatgtgcactattcacaaaacttactttgaccata 35570245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 27045669 - 27045599
Alignment:
Q  24 acttcctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccata 94  Q
    ||||| |||||||||||||| |||| |||||||||||||||| ||||||| || || |||| |||||||||    
T  27045669 acttcatccgtttcaaaatacatgttgcaattttacaatgtatactattcacatggtttactttgaccata 27045599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 5529012 - 5529060
Alignment:
Q  24 acttcctccgtttcaaaatatatgtcgcaattttacaatgtacactatt 72  Q
    ||||| |||||||||||||| |||||  |||||||||||||||||||||    
T  5529012 acttcatccgtttcaaaatacatgtcctaattttacaatgtacactatt 5529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 6766807 - 6766773
Alignment:
Q  28 cctccgtttcaaaatatatgtcgcaattttacaat 62  Q
    |||||||||||||||| ||||||||||||||||||    
T  6766807 cctccgtttcaaaatacatgtcgcaattttacaat 6766773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 16778510 - 16778580
Alignment:
Q  28 cctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccataattt 98  Q
    |||||||||||||||| |||||  | |||| |||||| |||||||| |  ||||||| |||||||||||||    
T  16778510 cctccgtttcaaaatacatgtccaacttttgcaatgtgcactattcacttggcttactttgaccataattt 16778580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 42662188 - 42662228
Alignment:
Q  24 acttcctccgtttcaaaatatatgtcgcaattttacaatgt 64  Q
    ||||| |||||||||||||| ||||||||||||| ||||||    
T  42662188 acttcttccgtttcaaaatacatgtcgcaattttgcaatgt 42662228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 47096275 - 47096315
Alignment:
Q  18 atcatcacttcctccgtttcaaaatatatgtcgcaatttta 58  Q
    |||| ||||||||||||||  ||||||||||||||||||||    
T  47096275 atcaacacttcctccgtttttaaatatatgtcgcaatttta 47096315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 15382682 - 15382638
Alignment:
Q  29 ctccgtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  15382682 ctccgtttcaaaatacatgtcgcaattttacaatgtacactattc 15382638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 31869714 - 31869761
Alignment:
Q  29 ctccgtttcaaaatatatgtcgcaattttacaatgtacactattccca 76  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31869714 ctccgtttcaaaatacatgtcgcgattttacaatgtacactattccca 31869761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 29790216 - 29790281
Alignment:
Q  33 gtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccataattt 98  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| || | ||||| | |||||||||||    
T  29790216 gtttcaaaatacatgtcgcaattttgcaatgtatactattcacatgacttacttggaccataattt 29790281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 41253015 - 41252975
Alignment:
Q  33 gtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  41253015 gtttcaaaatatatgtcgcaattttacaatgtgcactattc 41252975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 22516026 - 22516090
Alignment:
Q  30 tccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccata 94  Q
    ||||||| |||||| |||||| ||||||||| |||||||||||| ||  |||||| |||||||||    
T  22516026 tccgttttaaaatacatgtcggaattttacagtgtacactattcacatagcttactttgaccata 22516090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 15333058 - 15333018
Alignment:
Q  33 gtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    |||| |||||| |||||||||||||||||||| ||||||||    
T  15333058 gttttaaaatacatgtcgcaattttacaatgtgcactattc 15333018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 22782269 - 22782333
Alignment:
Q  26 ttcctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgac 90  Q
    ||||||||||||||| || |||||||||||||  ||||| |||||||| ||  |||||| |||||    
T  22782269 ttcctccgtttcaaactacatgtcgcaattttttaatgtgcactattcacatagcttactttgac 22782333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 22786633 - 22786697
Alignment:
Q  26 ttcctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgac 90  Q
    ||||||||||||||| || |||||||||||||  ||||| |||||||| ||  |||||| |||||    
T  22786633 ttcctccgtttcaaactacatgtcgcaattttttaatgtgcactattcacatagcttactttgac 22786697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 19897648 - 19897689
Alignment:
Q  32 cgtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  19897648 cgtttcaaaatacttgtcgcaattttacaatgtacactattc 19897689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 30191724 - 30191680
Alignment:
Q  29 ctccgtttcaaaatatatgtcgcaattttacaatgtacactattc 73  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||    
T  30191724 ctccgtttcaaaatacatgttgcaattttacaatgtgcactattc 30191680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 5428585 - 5428649
Alignment:
Q  30 tccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccata 94  Q
    |||||||||||||| |||||||| |||  |||||| |||||||| || | ||||| |||||||||    
T  5428585 tccgtttcaaaatacatgtcgcattttggcaatgtgcactattcacatgacttacgttgaccata 5428649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 24916503 - 24916439
Alignment:
Q  30 tccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccata 94  Q
    |||||||||||||| ||||| ||||||||||||||  ||||||| ||  |||||| |||||||||    
T  24916503 tccgtttcaaaatacatgtcacaattttacaatgtgtactattcacatagcttactttgaccata 24916439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 24992395 - 24992329
Alignment:
Q  28 cctccgtttcaaaatatatgtcgcaattttacaatgtacactattcccaaggcttacattgaccata 94  Q
    |||||||||||||||| |||||  | ||||||||||| |||||||| ||  |||||| |||||||||    
T  24992395 cctccgtttcaaaatacatgtcatagttttacaatgtgcactattcacatagcttactttgaccata 24992329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University