View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_low_17 (Length: 307)
Name: NF14098_low_17
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2598270 - 2598566
Alignment:
| Q |
1 |
caaaggtccaaatgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatttaaaatagcatgcttac |
100 |
Q |
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| T |
2598270 |
caaaggtccagatgggctaggtcatgtagtaaaggatgtatcaagaaatatgaaatatcttcaatccaaacatcttccccatttaaaatagcatgcttac |
2598369 |
T |
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| Q |
101 |
ctaaaaaatgcgctaatttgttgctgtttctactttctacgggaatgcctatactgatctacttttaatatttacgtttgcacaaaacctgttcagctgc |
200 |
Q |
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| T |
2598370 |
ctaaaaaatgcgctaatttgttgctgtttctactttctacggcaatgcctatactgatctacttttaatatttacgtttgcacaaaacctgttcagctgc |
2598469 |
T |
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| Q |
201 |
a------------------aagccaatgcttccgcgtcaaaaggttcttcattactttcatgatttcaattgtgctgaacattagagtcactgagga |
279 |
Q |
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| T |
2598470 |
aaagtgaatccctagcgtgaagccaatgcttccgcgtcaaaaggttcttcattactttcatgattccaattgtgctgaacattaaagtcactgagga |
2598566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2582964 - 2583046
Alignment:
| Q |
1 |
caaaggtccaaatgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatt |
83 |
Q |
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| T |
2582964 |
caaaggtccaaatgggctaggtcatgtaccaaaggatgtataaagaaatatggaatatcttcaatccaaacaccttccccatt |
2583046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 2583772 - 2583836
Alignment:
| Q |
68 |
aaacaccttccccatttaaaatagcatgcttacctaaaaaatgcgctaatttgttgctgtttcta |
132 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||| |||||||| |
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| T |
2583772 |
aaacaccttccccatttaaaatagcatacttagctaaaaaatgggctaattggttgttgtttcta |
2583836 |
T |
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