View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14098_low_18 (Length: 291)
Name: NF14098_low_18
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 8197564 - 8197318
Alignment:
| Q |
22 |
ggatctaatgcttttttcccttctagacataaaagggtttcttaccgacgttaagcctgcactgctgagtgctcttgacgcagaatatgagaagaaccca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8197564 |
ggatctaatgcttttttcccttctagacataaaagggtttcttaccgacgttaagcctgcactgctgagtgctctggacgcagaatatgagaagaaccca |
8197465 |
T |
|
| Q |
122 |
tttgaggtatgttgtgtttggggatgtaaattctatgtattatcatgattcctaatattaattttattaatttgtttatttgttttgtttcagggagcat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8197464 |
tttgaggtatgttgtgtttggggatgtaaattctatgtagtatcatgattcctaatattaattttattaatttgtttatttgttttgtttcagggagcat |
8197365 |
T |
|
| Q |
222 |
ctgcagttcccnnnnnnnctgtcagagcatcggattcatcttcatcc |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8197364 |
ctgcagttcccaaaaaaactgtcagagcatcggattcatcttcatcc |
8197318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 42354719 - 42354475
Alignment:
| Q |
23 |
gatctaatgcttttttcccttctagacataaaagggtttcttaccgacgttaagcctgcactgctgagtgctcttgacgcagaatatgagaagaacccat |
122 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42354719 |
gatctaatgcttttt-cccttgtagacataaaagggtttctcaccgacgttaagcctgcactgctgagtgctcttgacacagaatatgagaagaacccat |
42354621 |
T |
|
| Q |
123 |
ttgaggtatgttgtgtttggggatgtaaattctatgtattatcatgattcctaatattaattttattaatttgtttatttgttttgtttcagggagcatc |
222 |
Q |
| |
|
| ||||||||| |||||||| | |||| ||||||| | |||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
42354620 |
tcgaggtatgtcgtgtttggtgctgtatcttctatgcagtatcatgatttctaatactaattttattaatttattgatttgttttgtttcagggagcatc |
42354521 |
T |
|
| Q |
223 |
tgcagttcccnnnnnnnctgtcagagcatcggattcatcttcatcc |
268 |
Q |
| |
|
||||||| || ||||||| |||||||||| ||| |||||| |
|
|
| T |
42354520 |
tgcagttaccaaaaagactgtcagggcatcggatttatcatcatcc |
42354475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University