View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_low_19 (Length: 290)
Name: NF14098_low_19
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 73 - 275
Target Start/End: Original strand, 29289867 - 29290069
Alignment:
| Q |
73 |
aaacagatgataatacacataccaaaaactgtgcaacattagtcacgaggctaacaatatatgtcgcgtctcggtttttaaaggagtcaattgttgttgc |
172 |
Q |
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| T |
29289867 |
aaacggatgataatatacataccaaaaactgtgcaacattagtcacgaggctaacaatatatgtcgcgtctcggattttaaaggagtcaattgttgttgc |
29289966 |
T |
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| Q |
173 |
tatcaaaaaacctgcatcctgtatagagtgaaaaacattatacatagtgtttttagaggactttataagttttaaatgtcatgttcatttccacggcaaa |
272 |
Q |
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| T |
29289967 |
tatcaaaaaacctgcatcctgtatagagtgaaaaacattatacatagtgtttttagaggactttataagttttaaatgtcatgttcatttccacggcaaa |
29290066 |
T |
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| Q |
273 |
aag |
275 |
Q |
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| T |
29290067 |
aag |
29290069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29289821 - 29289869
Alignment:
| Q |
1 |
tttaaagttaaaaagtgtatgcccatcgtttaagctcacaaaagaaaaa |
49 |
Q |
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| T |
29289821 |
tttaaagttaaaaagtgtatgcccattgtttaagctcacaaaagaaaaa |
29289869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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