View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14098_low_29 (Length: 205)

Name: NF14098_low_29
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14098_low_29
NF14098_low_29
[»] chr5 (1 HSPs)
chr5 (11-110)||(27507987-27508086)
[»] chr7 (2 HSPs)
chr7 (11-110)||(26145872-26145971)
chr7 (11-106)||(44748041-44748136)
[»] chr6 (2 HSPs)
chr6 (11-110)||(30232185-30232284)
chr6 (11-110)||(137352-137451)
[»] chr4 (2 HSPs)
chr4 (11-105)||(35192981-35193075)
chr4 (28-85)||(36606507-36606564)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 27507987 - 27508086
Alignment:
Q  11 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcgg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27507987 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgttggagttgacggaaggaaaggtaacggcaacggcgg 27508086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 26145872 - 26145971
Alignment:
Q  11 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcgg 110  Q
    ||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  26145872 aaacaccagtgccaacgagttatgattgacttggtaattcagcttcacgttcaaaactcaccgtcgtagttgacggaaggaaaggtaatggcaacggcgg 26145971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 44748136 - 44748041
Alignment:
Q  11 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacg 106  Q
    |||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44748136 aaacaccagtgccaacaagttatgactcacttgctaactcggcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaatggcaacg 44748041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 30232185 - 30232284
Alignment:
Q  11 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcgg 110  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  30232185 aaacaccagtgccaacgagttatgactgacttggtaattcagcttcacattcaaaactcaccgtcgtagttgacggaaggaaaggtaatggcaacggcgg 30232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 137352 - 137451
Alignment:
Q  11 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcgg 110  Q
    ||||||||||||||||||||||||||| |||| |||| ||| ||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  137352 aaacaccagtgccaacgagttatgactgacttggtaattcaacttcaagttcaaaactcaccgtcgtagttgacagaaggaaaggtaatggcaacggcgg 137451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 35193075 - 35192981
Alignment:
Q  11 aaacaccagtgccaacgagttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaac 105  Q
    |||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| ||||||| |||||||||| | |||||||||||||||    
T  35193075 aaacaccagtgccaacaagttatgactcacttgctaactcggcttcacgttcaaaacttaccgtcgaagttgacggatgaaaaggtaacggcaac 35192981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 36606507 - 36606564
Alignment:
Q  28 agttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacg 85  Q
    |||| ||||||||| ||||||||||||||| |||||||||  |||||||||| |||||    
T  36606507 agttctgactcactcagtaactcagcttcatgttcaaaaccaaccgtcggagctgacg 36606564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University