View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_low_30 (Length: 203)
Name: NF14098_low_30
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 33251940 - 33251754
Alignment:
| Q |
1 |
acaacacggaagacttgtttcttacttttctttgtcatacactcactcttgtggttgctattacaaacatcattgtgttgatcaatcacgactcatgctt |
100 |
Q |
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| T |
33251940 |
acaacacggaagacttgtttcttacttttctttgtcacacactcactcttgtggttgctattacaaacatcattgtgttgatcaatcacgactcatgctt |
33251841 |
T |
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| Q |
101 |
gtgtgtttcatctgtacagtaatgatgtaataatatacttcttatagggtagtggaacctataaagttaaaaaacgactcatgccta |
187 |
Q |
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| T |
33251840 |
gtatgtttcatctgtacagtaatgatgtaataatatacttcttatagggtagtggaacctataaagttaaaaaacgactcatgccta |
33251754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 33265922 - 33265865
Alignment:
| Q |
131 |
taatatacttcttatagggtagtggaacctataaagtta-aaaaacgactcatgccta |
187 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||| | ||||||||| |
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| T |
33265922 |
taatatacttcttataaggtagtggaacctataaagttagaaaaactattcatgccta |
33265865 |
T |
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