View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14098_low_4 (Length: 659)

Name: NF14098_low_4
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14098_low_4
NF14098_low_4
[»] chr2 (2 HSPs)
chr2 (19-659)||(7962114-7962753)
chr2 (441-516)||(12793899-12793974)
[»] chr3 (3 HSPs)
chr3 (441-517)||(33161716-33161792)
chr3 (444-517)||(41876079-41876152)
chr3 (596-659)||(29192235-29192297)
[»] chr5 (8 HSPs)
chr5 (441-515)||(6784681-6784755)
chr5 (443-515)||(6775579-6775651)
chr5 (443-515)||(17491346-17491418)
chr5 (445-517)||(34367075-34367147)
chr5 (443-515)||(18915713-18915785)
chr5 (596-659)||(22869805-22869868)
chr5 (444-515)||(25345980-25346051)
chr5 (117-170)||(6005713-6005764)
[»] chr1 (1 HSPs)
chr1 (443-516)||(29579116-29579189)
[»] chr4 (3 HSPs)
chr4 (443-515)||(32116302-32116374)
chr4 (444-515)||(41128265-41128336)
chr4 (444-515)||(55048404-55048475)
[»] chr8 (1 HSPs)
chr8 (444-515)||(33863577-33863648)


Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Complemental strand, 7962753 - 7962114
Alignment:
Q  19 ttgctgtcagtctaatatttgtgggttaggtgtgtgtttacgacgatatggggattggaagaaggatagtagcattatta-gtgtgatttttaataaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7962753 ttgctgtcagtctaatatttgtgggttaggtgtgtgtttacga---tatggggattggaagaaggatagtagcattattaagtgtgatttttaataaata 7962657  T
Q  118 attatattttaatgcaaaataatcaaatgtatatttctttcaagtattttacattcatataaaatgtacagtaaaaagatttattaacgtggtttaacat 217  Q
    || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  7962656 atcatattttaattcaaaataatcaaatgcatatttctttcaagtattttacattcatataaaatgtacagtaaaagaatttattaacgtagtttaacat 7962557  T
Q  218 tatcgtatgctaaatttnnnnnnnttca--tattattgtatcatatgcatttatattgcgcatgagcttcataaacaaatgtgtttaatgcaaatttaga 315  Q
    |||||||||||||||||       || |  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  7962556 tatcgtatgctaaatttaaaaaaatttaaatattattgtatcatatgcatttatattgcgcatgagcttcataaacaaacgtgtttaatgcaaatttgga 7962457  T
Q  316 tgagcggtaagaatgataaatcataatcaactacatgattaaatttgctccagctcgcttgaaattcaattcacacttcatttcaatcaatgtacgtata 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962456 tgagcggtaagaatgataaatcataatcaactacatgattaaatttgctccagctcgcttgaaattcaattcacacttcatttcaatcaatgtacgtata 7962357  T
Q  416 cataatacttagctttgtaatcagcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962356 cataacacttagctttgtaatcatcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 7962257  T
Q  516 taacnnnnnnnnnctcacattttttcatcaaaacgcaccgttttagtttcttacaaccagaacgcagcgttttatccactctcttaactcttattttcat 615  Q
    | ||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  7962256 t-accttttttttctcacattttttcatcaaaacgcaccgttttagtttcttacaaccagaacgaagcgttttatagactctcttaactcttattttcat 7962158  T
Q  616 ttctcactaaaccttcatcttcatcatttttcttctgcaaaacc 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7962157 ttctcactaaaccttcatcttcatcatttttcttctgcaaaacc 7962114  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 516
Target Start/End: Original strand, 12793899 - 12793974
Alignment:
Q  441 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12793899 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 12793974  T

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Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 441 - 517
Target Start/End: Original strand, 33161716 - 33161792
Alignment:
Q  441 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161716 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 33161792  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 444 - 517
Target Start/End: Complemental strand, 41876152 - 41876079
Alignment:
Q  444 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41876152 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcatgtcaggttcata 41876079  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 596 - 659
Target Start/End: Original strand, 29192235 - 29192297
Alignment:
Q  596 ctcttaactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaacc 659  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29192235 ctcttaac-cttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaacc 29192297  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 6784755 - 6784681
Alignment:
Q  441 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784755 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6784681  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 443 - 515
Target Start/End: Complemental strand, 6775651 - 6775579
Alignment:
Q  443 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6775651 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6775579  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 443 - 515
Target Start/End: Original strand, 17491346 - 17491418
Alignment:
Q  443 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17491346 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 17491418  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 445 - 517
Target Start/End: Complemental strand, 34367147 - 34367075
Alignment:
Q  445 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34367147 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacatcaggttcata 34367075  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 443 - 515
Target Start/End: Original strand, 18915713 - 18915785
Alignment:
Q  443 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18915713 tggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 18915785  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 596 - 659
Target Start/End: Original strand, 22869805 - 22869868
Alignment:
Q  596 ctcttaactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaacc 659  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22869805 ctcttaactcttatttttatttctcactaaaccttcatcttcatcatttttcttctgcaaaacc 22869868  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 444 - 515
Target Start/End: Original strand, 25345980 - 25346051
Alignment:
Q  444 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  25345980 ggatccgtggcgcaatggtagcgcgtctgactccagatcaaaaggttgcgtgtttgattctcgtcgggttca 25346051  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 6005764 - 6005713
Alignment:
Q  117 aattatattttaatgcaaaataatcaaatgtatatttctttcaagtattttaca 170  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||    
T  6005764 aattatattataatg-aaaataatcaa-tgtatatttctttcaaatattttaca 6005713  T

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Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 516
Target Start/End: Complemental strand, 29579189 - 29579116
Alignment:
Q  443 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579189 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 29579116  T

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Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 443 - 515
Target Start/End: Original strand, 32116302 - 32116374
Alignment:
Q  443 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116302 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 32116374  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 515
Target Start/End: Complemental strand, 41128336 - 41128265
Alignment:
Q  444 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41128336 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 41128265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 515
Target Start/End: Complemental strand, 55048475 - 55048404
Alignment:
Q  444 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55048475 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 55048404  T

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Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 444 - 515
Target Start/End: Original strand, 33863577 - 33863648
Alignment:
Q  444 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33863577 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33863648  T

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