View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_low_5 (Length: 653)
Name: NF14098_low_5
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Complemental strand, 2944114 - 2943494
Alignment:
| Q |
18 |
ccattatggctgaagacactgaaacagctgcgagcaaaactgttaatgaacttcccatcaaggctatagtcactgtatctgcaaccaatgaaattaacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2944114 |
ccattatggctgaagacactgaaacagctgcgagcaaaactgttaatgaacttcccatcaaggctatagtcactgtatctgcaaccaatgaaattaacaa |
2944015 |
T |
|
| Q |
118 |
ccaagttcccatcaaggctattatagagactgtatcagcagacaatggatatggtaattaacttcttatccnnnnnnnnnnnnnnnnnnnnnnnnngaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2944014 |
ccaagttcccatcaaggctattatagagactgtatcagcagacaatggatatggtaattaacttcttatccttgttaattaattttatttaattttgaag |
2943915 |
T |
|
| Q |
218 |
cataacttgagcatcttgtatactactgtcatccctcttgcagaaattcctcagacaaagaggcgtagaccttgccatggttggatatctgatgatgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943914 |
cataacttgagcatcttgtatactactgtcatccctcttgcagaaattcctcagacaaagaggcgtagaccttgccatggttggatatctgatgatgatg |
2943815 |
T |
|
| Q |
318 |
aggaagagggggagttaatagaactacctgcattgtataagctagtgaatggggtacccatgaaaatggtgtgcccatgaactacctgcagaatgatagg |
417 |
Q |
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| T |
2943814 |
aggaagagggggagttaatagaactacctgcattgtataagctagtgaatggggtgcccatgaaaatggtgtgcccatgaactacctgcagaatgatagg |
2943715 |
T |
|
| Q |
418 |
tgctagagtgctacatgctccactagaagttatgtctatgctagaagtttttctttattgagatagaggaagtctactagaagttatgaaaataatttgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943714 |
tgctagagtgctacatgctccactagaagttatgtctatgctagaagtttttctttattgagatagaggaagtctactagaagttatgaaaataatttgt |
2943615 |
T |
|
| Q |
518 |
aacatatatatcctctcaaggtgtatctttttgtctgaaagacaattaataataaaattccgacaaaggccaatttaaggcgtagagaagttcttccaac |
617 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943614 |
aacatatatatcctctcaaggtgtctctttttgtctgaaagacaattaataatagaattccgacaaaggccaatttaaggcgtagagaagttcttccaac |
2943515 |
T |
|
| Q |
618 |
taattatgttatgtgcctatg |
638 |
Q |
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||||||||||||||||||||| |
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| T |
2943514 |
taattatgttatgtgcctatg |
2943494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 72 - 277
Target Start/End: Original strand, 36396508 - 36396717
Alignment:
| Q |
72 |
ccatcaaggctatagtcactgtatctgcaaccaatgaaattaacaaccaagttcccatcaaggctattatagagactgtatcagcagacaatggatatgg |
171 |
Q |
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|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396508 |
ccattaaggctgtaggcactgtatctgcaaccaatgaaattaacaaccaagttcccagcaaggctattatagagactgtatcagcagacaatggatatgg |
36396607 |
T |
|
| Q |
172 |
taat----taacttcttatccnnnnnnnnnnnnnnnnnnnnnnnnngaagcataacttgagcatcttgtatactactgtcatccctcttgcagaaattcc |
267 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36396608 |
taattaattaacttcttatccttgttaattaattttatttaattttgaagcataacttgagcatcttgtatactattgtcatccctcttgcagaaattcc |
36396707 |
T |
|
| Q |
268 |
tcagacaaag |
277 |
Q |
| |
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|||||||||| |
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| T |
36396708 |
tcagacaaag |
36396717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 494 - 633
Target Start/End: Original strand, 36397656 - 36397790
Alignment:
| Q |
494 |
ctagaagttatgaaaataatttgtaacatatatatcctctcaaggtgtatctttttgtctgaaagacaattaataataaaattccgacaaaggccaattt |
593 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||| ||||||||||||| || |||||||| ||||||||| |
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| T |
36397656 |
ctagaagttatgaaaataatttgtaacatgt----cctctcaaggtgtctctttttggctgaaaaacaattaataatagaactccgacaa-ggccaattt |
36397750 |
T |
|
| Q |
594 |
aaggcgtagagaagttcttccaactaattatgttatgtgc |
633 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||||||| |
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| T |
36397751 |
aaggcgtagagaagtccttccagctaattatgttatgtgc |
36397790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 36396748 - 36396850
Alignment:
| Q |
275 |
aagaggcgtagaccttgccatggttggatatctgatgatgatgaggaagagggggagttaatagaactacctgcattgtataagctagtgaatggggtac |
374 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
36396748 |
aagaagcgtagaccttgccatggttggatttctgatgatgatgagga------ggagttaatagaactgcctgcattgtataagctagtgaatggggtgc |
36396841 |
T |
|
| Q |
375 |
ccatgaaaa |
383 |
Q |
| |
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| ||||||| |
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| T |
36396842 |
ctatgaaaa |
36396850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 36396400 - 36396461
Alignment:
| Q |
18 |
ccattatggctgaagacactgaaacagctgcgagcaaaactgttaatgaacttcccatcaag |
79 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396400 |
ccattatggctgcagacactgaaacagctgcgagcaaaactgttaatgaacttcccatcaag |
36396461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 440
Target Start/End: Original strand, 36396942 - 36396976
Alignment:
| Q |
406 |
cagaatgataggtgctagagtgctacatgctccac |
440 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36396942 |
cagaatgataggtgctagagtgctacatgctccac |
36396976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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