View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_low_7 (Length: 618)
Name: NF14098_low_7
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 13 - 599
Target Start/End: Complemental strand, 829370 - 828781
Alignment:
| Q |
13 |
attattcttctcaggaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgtt |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829370 |
attattcttctcgggaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcgtt |
829271 |
T |
|
| Q |
113 |
ctagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatnnnnnnnnnnnnnnnnncaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
829270 |
ctagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaatacaacaacaacaacaaccaa |
829171 |
T |
|
| Q |
213 |
gccttatccaactaagtgggattcctctataccaaaagattaaatttgttttgcacatgcattcaatcaaaagttatatgctaacagtattttaaattaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829170 |
gccttatccaactaagtgggattcctctataccaaaagattaaatttgttttgcacgtgcattcaatcaaaagttatatgctaacagtattttaaattaa |
829071 |
T |
|
| Q |
313 |
attttaatagatcaaatccaaattttattgttgttgttgttgt---gctgcatgtagcattttgttttggaggaaaacatgcttgaggttgattgtccct |
409 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829070 |
attttaatagatcaaatccgaattttattgttgttgttgttgttgtgctgcatgtagcattttgttttggaggaaaacatgcttgaggttgattgtccct |
828971 |
T |
|
| Q |
410 |
gtgtgacaccagaggttgttctaaaagcttccggccacgtggaaaaattcaccgatctcatggtgaaggacgagaaaactggaacatgttaccgtgctga |
509 |
Q |
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| T |
828970 |
gtgtgacaccagaggttgttctaaaagcttccggccacgtggaaaaattcaccgatctcatggtgaaggacgagaaaactggaacatgttaccgtgctga |
828871 |
T |
|
| Q |
510 |
tcacttgctcaaggattattgcaatgagaagcttcaaaaggatctcacattgtcatcagacaaagctgcagagctcaaacacgtgcttgc |
599 |
Q |
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| T |
828870 |
tcacttgctcaaggattattgcaatgagaagcttcaaaaggatctcacattgtcatcagacaaagctgcagagctcaaacacgtgcttgc |
828781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 276 - 599
Target Start/End: Complemental strand, 835475 - 835151
Alignment:
| Q |
276 |
caatcaaaagttatatgctaacagtattt-taaattaaattttaatagatcaaatccaaattttattgttgttgttgttgtgctgcatgtagcattttgt |
374 |
Q |
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| T |
835475 |
caatcaaaagttttatgctaacaatatatataaattaaattttaataaatcaaatcctaaagttatttttgttgttgttgggctgctggtagcattttat |
835376 |
T |
|
| Q |
375 |
tttggaggaaaacatgcttgaggttgattgtccctgtgtgacaccagaggttgttctaaaagcttccggccacgtggaaaaattcaccgatctcatggtg |
474 |
Q |
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| T |
835375 |
gttggaggaaaagatgcttgaggttgattgtccctgtgtgacaccagaggttgttctgaaagcttccggccacgtggaaaagtttaccgatctcatggtg |
835276 |
T |
|
| Q |
475 |
aaggacgagaaaactggaacatgttaccgtgctgatcacttgctcaaggattattgcaatgagaagcttcaaaaggatctcacattgtcatcagacaaag |
574 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
835275 |
aaggacgagaaaactggaacgtgttaccgtgccgatcacttgctcaaggattattgcaatcagaagcttcaggaggatctcacattgtcatcagaaaaag |
835176 |
T |
|
| Q |
575 |
ctgcagagctcaaacacgtgcttgc |
599 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
835175 |
ctgcagagctgaaacacgtgcttgc |
835151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 21202239 - 21202297
Alignment:
| Q |
114 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
172 |
Q |
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|||| |||| |||||||| |||||| || ||||| |||||||||||| ||||||||||| |
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| T |
21202239 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
21202297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 362 - 599
Target Start/End: Complemental strand, 941368 - 941131
Alignment:
| Q |
362 |
tgtagcattttgttttggaggaaaacatgcttgaggttgattgtccctgtgtgacaccagaggttgttctaaaagcttccggccacgtggaaaaattcac |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || |||||||| |||||||| |||||||| |
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| T |
941368 |
tgtagcattttgttttggaggaaaacatgcttgaggttgattgtccatctgtgacgccggaggttgttctgaaggcttccggtcacgtggagaaattcac |
941269 |
T |
|
| Q |
462 |
cgatctcatggtgaaggacgagaaaactggaacatgttaccgtgctgatcacttgctcaaggattattgcaatgagaagcttcaaaaggatctcacattg |
561 |
Q |
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||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
941268 |
tgatctcatggtgaaggatgagaaaaccggcacttgttaccgtgctgatcacttgctcaaggactattgcaatgagaagcttcagaaggatctcacattg |
941169 |
T |
|
| Q |
562 |
tcatcagacaaagctgcagagctcaaacacgtgcttgc |
599 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
941168 |
tcatcagacaaagctgcagagctcaagcacgtgcttgc |
941131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 37985029 - 37985061
Alignment:
| Q |
117 |
cgtagtagaatttgagcaaactactatttctac |
149 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
37985029 |
cgtagtagaatttgagcaaactgctatttctac |
37985061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 42201063 - 42201121
Alignment:
| Q |
114 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
172 |
Q |
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|||| |||| |||||||| |||||| || ||||| |||||||||||| ||||||||||| |
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| T |
42201063 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
42201121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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