View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_low_8 (Length: 494)
Name: NF14098_low_8
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 108 - 478
Target Start/End: Original strand, 50046880 - 50047250
Alignment:
| Q |
108 |
cagaatataagaatggtaaccatagtagagatttgaatgcagttaagctgaaagttgactaggatatagggatatttgctcaaactttggtatttttaat |
207 |
Q |
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| T |
50046880 |
cagaatataagaatggtaaccatagtagagatttgaatgcagttaagctgaaagttgactaggatatagggatatttgctcaaactttggtatttttaat |
50046979 |
T |
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| Q |
208 |
ataagaaattatgtctaagctaagcatgtctggcttagaaaagaagcagttaacagtattttaaaccctgcttgacaaacttaatagcataaaaacttta |
307 |
Q |
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| T |
50046980 |
ataagaaattatgtctaagctaagcatgtctggcttagaaaagaagcagttaacagtattttaaaccctgcttgacaaacttaatagcataaaaacttta |
50047079 |
T |
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| Q |
308 |
aacgtaggaaacgtaggtggtaaatactatatctacatcttctttccccttttttactcctctgtagtaatacttgtaaccaagcaagtctaaagtttct |
407 |
Q |
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| T |
50047080 |
aaggtaggaaacgtaggtggtaaatactatatctacatcttctttccccttttttactcctctgtagtaatacttataaccaagcaagtctaaagtttct |
50047179 |
T |
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| Q |
408 |
agtataattgttgcaatgtaatagttttttgtttgtttattttccgaatgttaattctttcccttaccaac |
478 |
Q |
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| T |
50047180 |
agtataattgttgcaatgtaatagttttttgtttgtttgttttccgaatgttaattctttcccttaccaac |
50047250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 50046785 - 50046846
Alignment:
| Q |
14 |
aggtaaccatatgagcttaaagtagaagaaaagttatgaaagaatttcacggcaataatttc |
75 |
Q |
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| T |
50046785 |
aggtaaccatatgagcttaaagtagaagaaaagttatggaagaatttcacggcaataatttc |
50046846 |
T |
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