View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14099_low_1 (Length: 692)

Name: NF14099_low_1
Description: NF14099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14099_low_1
NF14099_low_1
[»] chr1 (1 HSPs)
chr1 (6-687)||(448091-448777)


Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 6 - 687
Target Start/End: Original strand, 448091 - 448777
Alignment:
Q  6 ataaatcgattgaaacacaaaatagatagatctagttaggagtgttgaattaattacctactgtagaaaatgacagcgacgatagcgacaccggcgaggg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  448091 ataaagcgattgaaacacaaaatagatagatctagttaggagtgttgaattaattacctactgtagaaaatgacagcgacgatagcgacaccggcgaggg 448190  T
Q  106 cggtgaagacgaccgccggagtagagtttggtggcgttgcggccatgagagagaatctacccttgcggccggttttggcaccggcggcaacagagagaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  448191 cggtgaagacgaccgccggagtagagtttggtggcgttgcggccatgagagagaatctacccttgcggccggttttggcaccggcggcaacagagagaat 448290  T
Q  206 ggcagttgtgtcggtgttgaagtgggaggaggatgtgttcatctcatctcatttcatggatcagaaatttggaattacgttaatgcccttttgtatcatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  448291 ggcagttgtgtcggtgttgaagtgggaggaggatgtgttcatctcatctcatttcatggatcagaaatttggaattacgttaatgcccttttgtatcatt 448390  T
Q  306 tctcttgcatcattcttcttcattcaccttccgagttatttctatatcttttctgcaaaaagagggtgaaatggaaat---agaatgaagaaagttccac 402  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||   |||| ||||||||||||||    
T  448391 tctctcgcatcattcttcttcattcacattccgagttatttctatgtcttttctgcaaaaagagggtgaaatggaaatagaagaaggaagaaagttccac 448490  T
Q  403 gttctagatgattgattgattacgcat------agaagaagataagcattttagttannnnnnnnggttatgatcgacagtttttccatttatatatatt 496  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  448491 gttctagatgattgattgattacgcatagaagaagaagaagataagcattttagtta--atttttggttatgatcgacagtttttccatttatatatatt 448588  T
Q  497 attgtaggggtcttatacgggaattattcatttcatagtggccataaatcatttcatgcatttaagattattactagtgaatttattaattgttcttata 596  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || | ||||||||||||||| ||| |||    
T  448589 attgtaggggacttatacgggaattattcatttcataggggcaataaatcatttcatgcatttaagattataacgactgaatttattaattggtctaata 448688  T
Q  597 aannnnnnnnngtttgtgaatttaatctcggacaaagattaaatctaaactaatctgaccttttaaacttgattcaaatcaatctctatat 687  Q
    |           |||||||||||| || | |||||||||||||||||||||||||| || ||||| ||  ||  |||||||||| ||||||    
T  448689 a--ttttttttttttgtgaatttagtcaccgacaaagattaaatctaaactaatctcacattttataccggagacaaatcaatcgctatat 448777  T

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