View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14099_low_2 (Length: 513)
Name: NF14099_low_2
Description: NF14099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14099_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 7296096 - 7296349
Alignment:
| Q |
18 |
agtctaatcatatagagtgatnnnnnnnngtctaattgtagagtcaaccgatctaatctgtgtgtgtatatatgtatgtacctggaaaaatgagttgttt |
117 |
Q |
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| T |
7296096 |
agtctaatcatatagagtgataaaaaaaagtctaattgtagagtcaaccgatctaatctgtgtgtgtatatatgtatgtacctggaaaaatgagttgttt |
7296195 |
T |
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| Q |
118 |
gcataacttgttttcccatcgcctccattcatgtgcactatcttccccacgtccattcttgcttcttttagctttatttctctttagatataaatttatg |
217 |
Q |
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| T |
7296196 |
gcataacttgttttcccatcgcctccattcatgtgcactatcttccccacgtccattcttgcttcttttagctttatttctctctagatataaatttatg |
7296295 |
T |
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| Q |
218 |
ctgtgttatgtgcactatcatttaaaagatatgttgtgtaatgtgtacactaac |
271 |
Q |
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| T |
7296296 |
ttgtgtaatgtgcactatcatttaaaagatatgttgagtaatgtgtacactaac |
7296349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 7298498 - 7298586
Alignment:
| Q |
105 |
aaatgagttgtttgcataacttgttttcccatcgcctccattcatgtgcactatcttccccacgtccattcttgcttcttttagcttta |
193 |
Q |
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| T |
7298498 |
aaatgagttttttgcatagcttgtttctccatcacctccattcatgtgcactacctgccccaggtccattcttgtttctattagcttta |
7298586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 31398574 - 31398515
Alignment:
| Q |
280 |
ggaaaaagatcggtgaacacacttataagtgtacacccctcctaccacctctgatttggc |
339 |
Q |
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| T |
31398574 |
ggaaaaagattggtgaacacactaataagtgtacacccctcctaccacctcttatttggc |
31398515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 22243225 - 22243166
Alignment:
| Q |
280 |
ggaaaaagatcggtgaacacacttataagtgtacacccctcctaccacctctgatttggc |
339 |
Q |
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| T |
22243225 |
ggaaaaagattggtgaacacactaataagtgtacacccctcctaccacctcttatttggc |
22243166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 14055076 - 14055127
Alignment:
| Q |
286 |
agatcggtgaacacacttataagtgtacacccctcctaccacctctgatttggc |
339 |
Q |
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| T |
14055076 |
agattggtgaacacacttataagt--acacccctcctaccacctctgatttggc |
14055127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 24709170 - 24709122
Alignment:
| Q |
280 |
ggaaaaagatcggtgaacacacttataagtgtacaccc-ctcctaccac |
327 |
Q |
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|||||||||| |||| |||||||| ||||||||||||| |||||||||| |
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| T |
24709170 |
ggaaaaagattggtggacacacttttaagtgtacaccctctcctaccac |
24709122 |
T |
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