View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1409_high_2 (Length: 441)
Name: NF1409_high_2
Description: NF1409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1409_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 435
Target Start/End: Original strand, 3074468 - 3074891
Alignment:
| Q |
12 |
aacaataacaaaccatatcccattaagtggttgactacatgaatcaaacaacgacatagtgttcatccgaaatcacagctttctccaactcatttaactc |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3074468 |
aacaataacaagccatatcccattaagtggttgactacatgaatcaaacaacgacatagtgttcatccgaaatcacgtctttctccaactcatttaactc |
3074567 |
T |
|
| Q |
112 |
tagatcactgaaaagtgactatctgaactaaaacaccaagccataagataatggactgatggtaacattataataaatgttgcaagggaaacacgactaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3074568 |
tagatcactgaaaagtgactatctgaactaaaacaccaagccataagataatggactaatggtaacattataataaatgttgcaagggaaacacgactaa |
3074667 |
T |
|
| Q |
212 |
atgggacaatgctacagtgcacgtagtcctggtcttaaacagaaagagttacaagcttggcatctgcaccagggtccaggcccgtcaaactgaagcgggc |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3074668 |
atgggacaatgctacagtgcatgtagtcctggtcttaaacagaaagagttacaagcttggcatctgcaccagggtccaggcccgtcaaactgaagcgggc |
3074767 |
T |
|
| Q |
312 |
ctggatttccataaattttgtccaccagaaaactagtcgcatttctgtggaacaacctgcaaaccagaacatgcatcagagcactgactacgaagaaata |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3074768 |
ctggatttccataaattttgtccaccagaaaactagtcgcatttctgtggaacaacctgcaaaccagaacatgcatcagagcactgactacgaagaaata |
3074867 |
T |
|
| Q |
412 |
tatccaggcaacctttgataaaga |
435 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3074868 |
tatccaggcaacctttgataaaga |
3074891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 311 - 433
Target Start/End: Original strand, 21156659 - 21156781
Alignment:
| Q |
311 |
cctggatttccataaattttgtccaccagaaaactagtcgcatttctgtggaacaacctgcaaaccagaacatgcatcagagcactgactacgaagaaat |
410 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
21156659 |
cctggatttccataaattccgtccaccagaaagctagtcgcatatctacagaacaacctgcaaacaagaacatgcatcagagccctgactaccaagaaat |
21156758 |
T |
|
| Q |
411 |
atatccaggcaacctttgataaa |
433 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21156759 |
atatccaggcaacctttgataaa |
21156781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 369
Target Start/End: Original strand, 21159831 - 21160001
Alignment:
| Q |
195 |
aagggaaacacgactaaatgggacaatgctacagtgcacgtagtcctggtcttaaacagaaagagttacaagc---ttggcatctgcaccagggtccagg |
291 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||| | || |||||||||||||||||| |
|
|
| T |
21159831 |
aagggaaacgtgactaaatgggaaaatgcagcagtgcatgtagtcctggtcttaaacagagagagttataggctttttggcatctgcaccaggg------ |
21159924 |
T |
|
| Q |
292 |
cccgtcaaactgaagcgggcctggatttccataaattttgtccaccagaaaactagtcgcatttctgtggaacaacct |
369 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||| || |||||||| |
|
|
| T |
21159925 |
-ccatcaaactgaagcgggcctggatttagataaataccatccacaagaatcctagtcacatttctatgcaacaacct |
21160001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 12593130 - 12593198
Alignment:
| Q |
287 |
ccaggcccgtcaaactgaagcgggcctggatttccataaattttgtccaccagaaaactagtcgcattt |
355 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||| |||||| | ||||| ||||| || ||||||||| |
|
|
| T |
12593130 |
ccaggaccatcaaactgaagtgggcctggatttctataaatatcgtccataagaaagcttgtcgcattt |
12593198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 42543478 - 42543406
Alignment:
| Q |
46 |
ctacatgaatcaaacaacgacatagtgttc-atccgaaatcacagctttctccaactcatttaactctagatc |
117 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||| ||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
42543478 |
ctacatgaatcaaacaacgccatagcgttctatcaaaaagcacgtctttctccaactcatttatctctagatc |
42543406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University