View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1409_high_4 (Length: 255)
Name: NF1409_high_4
Description: NF1409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1409_high_4 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 20445592 - 20445365
Alignment:
| Q |
28 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20445592 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaatt |
20445493 |
T |
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| Q |
128 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccgatgt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20445492 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcccttcaagagcttcaccgatgt |
20445393 |
T |
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| Q |
228 |
ttttgtgacgcagacaaggccggttctc |
255 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20445392 |
ttttgtgacgcagacaaggccggttctc |
20445365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 20433392 - 20433165
Alignment:
| Q |
28 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20433392 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaatt |
20433293 |
T |
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| Q |
128 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccgatgt |
227 |
Q |
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| T |
20433292 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcccttcaagagcttcaccaatgt |
20433193 |
T |
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| Q |
228 |
ttttgtgacgcagacaaggccggttctc |
255 |
Q |
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| T |
20433192 |
ttttgtgacgcagacaaggccggttctc |
20433165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 20439865 - 20439638
Alignment:
| Q |
28 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20439865 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaatt |
20439766 |
T |
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| Q |
128 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccgatgt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
20439765 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcccttcaagagcttcaccaatgt |
20439666 |
T |
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| Q |
228 |
ttttgtgacgcagacaaggccggttctc |
255 |
Q |
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| T |
20439665 |
ttttgtgacgcagacaaggccggttctc |
20439638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 20427175 - 20426950
Alignment:
| Q |
28 |
atatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20427175 |
atatcaatggtcacggatgctcaccaatgctcaattattttctatttcctaatgtttttgttttctgtcttaaataaaactttagaaaaacatgacaatt |
20427076 |
T |
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| Q |
128 |
gtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattgactaattgaccacgcccatagaaaatcctttcaagagcttcaccgatgt |
227 |
Q |
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||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||||| |
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| T |
20427075 |
gtgcttaaatgattttttaatgcccatcaaatcaagttgatatttgtattgactaattgaccacacc--tagaaaatcctttaaagagcttcgccgatgt |
20426978 |
T |
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| Q |
228 |
ttttgtgacgcagacaaggccggttctc |
255 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20426977 |
ttttgtgacgcagacaaggccggttctc |
20426950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 20410397 - 20410298
Alignment:
| Q |
58 |
tcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaattgtgcttaaatga-tatatcaatgctcatca |
156 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| | ||||||||||||||| |
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| T |
20410397 |
tcaattcttttctatttcctattgtttttgttttctgtcataaataaatcttgagaa----atgacaattgtgcttaattgattttatcaatgctcatca |
20410302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 20372830 - 20372971
Alignment:
| Q |
112 |
gaaaaacatgacaattgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattga-ctaattgaccacgcccatagaaaatcctttc |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||||| | |||||||||| || | |
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| T |
20372830 |
gaaaaaaatgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaatcgttgc |
20372929 |
T |
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| Q |
211 |
aagagcttcaccgatgtttttgtgacgcagacaaggccggtt |
252 |
Q |
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||||| |||||| ||||| ||||| |||||| || |||||| |
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| T |
20372930 |
aagaggttcaccattgtttctgtgatgcagacgagcccggtt |
20372971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 20410290 - 20410253
Alignment:
| Q |
218 |
tcaccgatgtttttgtgacgcagacaaggccggttctc |
255 |
Q |
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| T |
20410290 |
tcaccgatgtttttgtgacgcagacaaggccggttctc |
20410253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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