View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1409_low_1 (Length: 563)
Name: NF1409_low_1
Description: NF1409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1409_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 113 - 535
Target Start/End: Original strand, 40834004 - 40834423
Alignment:
| Q |
113 |
taagaaaagagagaaaacgacacatattagacaatagacacgtcttaattagaagtgtccgtggttaacttaacagagagaaaacatagagaagaaagca |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40834004 |
taagaaaagagagaaaacgacatatattagacactagacacgtcttagttagaagtgtccgtggttaa-----cagagagaaaacatagagaagaaagca |
40834098 |
T |
|
| Q |
213 |
gctaagtaaaacatacacaggtgccaagaagaggaacaaagcagaagcattccctgaaccaacaaagaacaaactgtgagaatcagaagnnnnnnnntta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40834099 |
gctaagtaaaacatacacaggtgccaagaagaggaacaaagcagaagcattccctgaaccaacaaagaacaaactgtgagaatcagaaaaaaaaaaatta |
40834198 |
T |
|
| Q |
313 |
tacaacaaggtaaaagtaagagtaaaaatgataataaattaattaacctaccaaatatgccaaacaaaagatgtgcaacatgcatgatgttgaatactan |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40834199 |
tacaacaaggtaaaagtaagagtaaaaatgataataaattaattaacctaccaaatatgccaaacaaaagatgtgcaacatgcatgatgttgaatactat |
40834298 |
T |
|
| Q |
413 |
nnnnnncctctc--ttctttttgttgagagaacaaaattggtgaaagaatgctatttattagtttcttgagaaatggtaatggattatgatgatagtagt |
510 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40834299 |
ttttttcctctcctttctttttgttgagagaacaaaattggtgaaagaatgctatttattagtttcttgagaaatggtaatggattatgatgatagtagt |
40834398 |
T |
|
| Q |
511 |
agagtagtagttagtgggtttatat |
535 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40834399 |
agagtagtagttagtgggtttatat |
40834423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40833840 - 40833959
Alignment:
| Q |
1 |
tcatgcatttgaattgtgttccaagtctcacatcaaataaaactatcaattaaatatatttataagtggcgacgaaatgg-tttgtggtgttgagttaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40833840 |
tcatgcatttgaattgtgttccaagtctcacatcaaataaaactatcacttaaatatatttataagtggcgacgaaatggttttgtggtgttgagttaga |
40833939 |
T |
|
| Q |
100 |
ctcatctcatttctaagaaa |
119 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
40833940 |
ctcgtctcatttctaagaaa |
40833959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University