View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1409_low_3 (Length: 437)

Name: NF1409_low_3
Description: NF1409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1409_low_3
NF1409_low_3
[»] chr7 (22 HSPs)
chr7 (133-266)||(8260827-8260961)
chr7 (133-259)||(41219381-41219507)
chr7 (134-237)||(37524164-37524267)
chr7 (133-245)||(39476497-39476609)
chr7 (140-259)||(27874038-27874157)
chr7 (143-265)||(29714248-29714370)
chr7 (132-231)||(34354394-34354493)
chr7 (135-215)||(21153753-21153833)
chr7 (252-327)||(21153692-21153767)
chr7 (133-259)||(18239413-18239539)
chr7 (189-265)||(39283938-39284014)
chr7 (132-266)||(4035156-4035291)
chr7 (136-206)||(21613032-21613102)
chr7 (137-243)||(35126246-35126353)
chr7 (222-296)||(33802892-33802966)
chr7 (223-266)||(31267974-31268017)
chr7 (230-264)||(8727128-8727162)
chr7 (227-265)||(33802923-33802961)
chr7 (12-53)||(1536965-1537006)
chr7 (20-53)||(21153913-21153946)
chr7 (12-53)||(34354302-34354343)
chr7 (229-269)||(4452892-4452932)
[»] chr4 (34 HSPs)
chr4 (133-259)||(49065557-49065683)
chr4 (133-265)||(9242925-9243057)
chr4 (149-263)||(2777925-2778039)
chr4 (133-259)||(27761136-27761262)
chr4 (143-259)||(24608170-24608286)
chr4 (143-265)||(49261801-49261924)
chr4 (133-259)||(21713171-21713297)
chr4 (133-259)||(38131393-38131519)
chr4 (90-206)||(32935692-32935806)
chr4 (189-266)||(37694574-37694651)
chr4 (135-207)||(42039021-42039093)
chr4 (135-262)||(13856070-13856196)
chr4 (150-266)||(34939381-34939498)
chr4 (143-266)||(31936339-31936461)
chr4 (144-262)||(13867800-13867917)
chr4 (133-266)||(42118922-42119056)
chr4 (133-265)||(52789344-52789477)
chr4 (135-206)||(372703-372774)
chr4 (133-243)||(14289680-14289790)
chr4 (133-177)||(31823045-31823089)
chr4 (137-215)||(40962703-40962782)
chr4 (188-323)||(54703528-54703663)
chr4 (12-53)||(32935843-32935884)
chr4 (227-264)||(43139623-43139660)
chr4 (227-265)||(37694612-37694650)
chr4 (135-184)||(40220991-40221041)
chr4 (198-243)||(8932545-8932589)
chr4 (12-53)||(36174298-36174339)
chr4 (133-273)||(43502290-43502431)
chr4 (12-53)||(46814169-46814210)
chr4 (12-53)||(47043708-47043749)
chr4 (12-53)||(53266089-53266130)
chr4 (229-265)||(2777925-2777961)
chr4 (133-177)||(14329021-14329065)
[»] chr3 (24 HSPs)
chr3 (132-274)||(6462935-6463077)
chr3 (135-260)||(6755723-6755848)
chr3 (141-259)||(48086797-48086915)
chr3 (133-257)||(39415302-39415426)
chr3 (133-245)||(25574795-25574907)
chr3 (137-264)||(50561394-50561520)
chr3 (151-262)||(47560397-47560512)
chr3 (189-259)||(49742161-49742231)
chr3 (200-266)||(53401547-53401613)
chr3 (135-259)||(14995140-14995265)
chr3 (189-266)||(49501594-49501671)
chr3 (252-327)||(8189165-8189241)
chr3 (194-265)||(2182556-2182627)
chr3 (189-259)||(23029602-23029672)
chr3 (90-206)||(8628438-8628551)
chr3 (135-242)||(25745146-25745253)
chr3 (227-266)||(36182819-36182858)
chr3 (231-273)||(50561676-50561718)
chr3 (12-53)||(35485563-35485604)
chr3 (189-230)||(37282182-37282223)
chr3 (12-53)||(42947682-42947723)
chr3 (12-53)||(53824609-53824650)
chr3 (12-56)||(2325331-2325375)
chr3 (159-259)||(7956293-7956393)
[»] chr2 (23 HSPs)
chr2 (133-259)||(29908457-29908583)
chr2 (133-266)||(29132641-29132774)
chr2 (133-266)||(6903722-6903854)
chr2 (133-244)||(12874212-12874323)
chr2 (131-244)||(8556207-8556320)
chr2 (133-202)||(28266018-28266087)
chr2 (190-246)||(37057167-37057223)
chr2 (133-262)||(4616643-4616773)
chr2 (189-323)||(41192445-41192579)
chr2 (167-259)||(16710243-16710335)
chr2 (133-266)||(5814540-5814675)
chr2 (189-266)||(5290762-5290839)
chr2 (150-266)||(21083716-21083833)
chr2 (146-183)||(25686072-25686109)
chr2 (222-266)||(30398213-30398257)
chr2 (222-266)||(30398431-30398475)
chr2 (227-265)||(1887867-1887905)
chr2 (196-265)||(1887867-1887936)
chr2 (12-53)||(11713276-11713317)
chr2 (133-206)||(13785051-13785124)
chr2 (189-246)||(34619963-34620020)
chr2 (189-273)||(2195229-2195313)
chr2 (189-245)||(32737934-32737990)
[»] chr6 (17 HSPs)
chr6 (133-265)||(13312535-13312667)
chr6 (137-243)||(23912260-23912366)
chr6 (133-259)||(319179-319305)
chr6 (149-212)||(17399035-17399098)
chr6 (189-266)||(30634177-30634254)
chr6 (133-206)||(24173565-24173638)
chr6 (164-224)||(9521402-9521462)
chr6 (252-323)||(9521449-9521520)
chr6 (133-266)||(11598967-11599101)
chr6 (181-262)||(1077584-1077664)
chr6 (230-266)||(1077584-1077620)
chr6 (133-177)||(2419802-2419846)
chr6 (189-243)||(3515280-3515334)
chr6 (12-53)||(11718538-11718579)
chr6 (157-186)||(11718687-11718716)
chr6 (12-53)||(16444584-16444625)
chr6 (90-118)||(11718616-11718644)
[»] chr1 (27 HSPs)
chr1 (133-245)||(3660183-3660295)
chr1 (133-265)||(48566706-48566838)
chr1 (133-245)||(21482874-21482986)
chr1 (143-261)||(5770578-5770696)
chr1 (133-259)||(41871687-41871813)
chr1 (135-259)||(18843986-18844110)
chr1 (133-244)||(46923747-46923858)
chr1 (133-259)||(39222657-39222783)
chr1 (135-245)||(47983650-47983760)
chr1 (167-265)||(5766863-5766961)
chr1 (150-266)||(10308421-10308537)
chr1 (157-265)||(23602987-23603096)
chr1 (133-210)||(49597196-49597273)
chr1 (133-261)||(1671331-1671460)
chr1 (133-264)||(30858446-30858578)
chr1 (132-267)||(33686548-33686684)
chr1 (133-265)||(7014779-7014912)
chr1 (133-258)||(20447122-20447247)
chr1 (133-258)||(20532885-20533010)
chr1 (158-246)||(18178887-18178973)
chr1 (156-266)||(12926775-12926886)
chr1 (192-263)||(22605389-22605460)
chr1 (133-183)||(46178671-46178721)
chr1 (133-206)||(11012143-11012216)
chr1 (133-206)||(26013689-26013762)
chr1 (12-53)||(47485706-47485747)
chr1 (12-53)||(50065781-50065822)
[»] chr8 (16 HSPs)
chr8 (133-259)||(34471599-34471724)
chr8 (133-246)||(23542749-23542862)
chr8 (133-245)||(43693571-43693683)
chr8 (191-262)||(1217743-1217814)
chr8 (133-266)||(5913121-5913255)
chr8 (189-262)||(15743251-15743324)
chr8 (189-266)||(42182608-42182685)
chr8 (133-266)||(4759213-4759347)
chr8 (135-215)||(3964008-3964087)
chr8 (189-265)||(9039614-9039690)
chr8 (12-51)||(28704162-28704201)
chr8 (172-265)||(43835370-43835464)
chr8 (196-265)||(6253821-6253890)
chr8 (12-53)||(43635426-43635467)
chr8 (227-263)||(9511744-9511780)
chr8 (279-327)||(10833717-10833765)
[»] chr5 (25 HSPs)
chr5 (131-259)||(7083976-7084104)
chr5 (133-265)||(1172942-1173074)
chr5 (133-245)||(6427252-6427364)
chr5 (133-257)||(28784776-28784900)
chr5 (133-244)||(41758718-41758829)
chr5 (133-206)||(10532800-10532873)
chr5 (165-265)||(11125823-11125922)
chr5 (152-274)||(16100820-16100942)
chr5 (135-246)||(20202617-20202727)
chr5 (133-262)||(1081893-1082023)
chr5 (189-266)||(12143994-12144071)
chr5 (188-269)||(36310352-36310432)
chr5 (131-266)||(2786680-2786816)
chr5 (133-206)||(10399270-10399343)
chr5 (133-265)||(18172140-18172273)
chr5 (189-266)||(40034064-40034141)
chr5 (131-243)||(43147429-43147542)
chr5 (135-246)||(19043852-19043964)
chr5 (227-265)||(11125884-11125922)
chr5 (12-53)||(1172824-1172865)
chr5 (12-53)||(1974473-1974514)
chr5 (12-53)||(3461302-3461343)
chr5 (12-53)||(10532929-10532970)
chr5 (149-206)||(25898642-25898699)
chr5 (12-53)||(40017072-40017113)
[»] scaffold0753 (1 HSPs)
scaffold0753 (133-265)||(3947-4080)
[»] scaffold0217 (1 HSPs)
scaffold0217 (133-262)||(25550-25680)
[»] scaffold0861 (1 HSPs)
scaffold0861 (133-244)||(3731-3842)
[»] scaffold0051 (1 HSPs)
scaffold0051 (150-246)||(20061-20158)
[»] scaffold0223 (1 HSPs)
scaffold0223 (143-210)||(16098-16166)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 8260961 - 8260827
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||||| |||| |||||||||| |||||| |||||||||||||| ||||| | || |||||||||||||||||||||| |||||||||||||||||| |    
T  8260961 tttgttcatcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctcagtggtgcgtgacttaagtcacgcagagattataaggtgcat 8260862  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||||| ||| |||||||||||||||    
T  8260861 gagttaagtcacgcagcgtgacttaactcacgcag 8260827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 41219381 - 41219507
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||| |||||| ||||||| ||||      
T  41219381 tttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggccagtgatgcgtgacttaagtcacgcagaggttataagatgcgca 41219480  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||| |||||||  |||||||||||    
T  41219481 agttaaatcacgcagtgtaacttaact 41219507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 37524164 - 37524267
Alignment:
Q  134 ttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtga 233  Q
    |||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |    
T  37524164 ttgtacttcagttctgaccaccagccaacgtgcgtgaggtaactcgcgcacaggccagtggtgcgtgacttaagtcacgcagagcttataaggtgcgtta 37524263  T
Q  234 gtta 237  Q
    ||||    
T  37524264 gtta 37524267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 39476609 - 39476497
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||| ||||| | || | ||||||||||||||||||| ||| |||||||||||||||      
T  39476609 tttgttcttcagctctgaccaccggccatggtgcgtgagttaactcgcgcataggctaatggtgcgtgacttaagtcacgcatagattataaggtgcgct 39476510  T
Q  233 agttaagtcacgc 245  Q
    |||||||||||||    
T  39476509 agttaagtcacgc 39476497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 27874038 - 27874157
Alignment:
Q  140 ttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaag 239  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| | | |||||||||||| ||||||||| |||||| ||||| ||||||  |||||||    
T  27874038 ttcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggtcagtggtgcgtggcttaagtcacgcagaggttatatggtgcgcaagttaag 27874137  T
Q  240 tcacgcaacgtaacttaact 259  Q
     |||||| ||| ||||||||    
T  27874138 ccacgcagcgtgacttaact 27874157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 29714370 - 29714248
Alignment:
Q  143 agctctgacca-ccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtc 241  Q
    ||||||||||| || |||||| |||||||||||||| |||| || | ||||||||| |||||||||||| ||||||  |||||||||||||| |||||||    
T  29714370 agctctgaccaaccggccaacctgcgtgagttaactcgcgcccaagtcagtggtgcatgacttaagtcacgcagag-ctataaggtgcgtgatttaagtc 29714272  T
Q  242 acgcaacgtaacttaactcacgca 265  Q
    ||||| ||| |||||||| |||||    
T  29714271 acgcagcgtgacttaactaacgca 29714248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 34354394 - 34354493
Alignment:
Q  132 atttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| | |||| |||||||||||||| ||||||||||| ||||| | ||||||||| |||||||||||||| ||||||  ||||||||||||    
T  34354394 atttgttcttcaacactgatcaccagccaacgtgtgtgagttaactcgcgcataggccagtggtacgtgacttaagtcacgcagagcatataaggtgcgt 34354493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 21153833 - 21153753
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcag 215  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||    
T  21153833 tgttcttcagctccgaccaccggccgacgtgcgtgagttaactcacgcacatgccagtggtgcgtgacttaactcacgcag 21153753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 21153767 - 21153692
Alignment:
Q  252 acttaactcacgcagagatataaaagaaaatcacgctgggcgcgaacaaaaaatgcagggggaagagcagaaatct 327  Q
    ||||||||||||||| | ||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||||    
T  21153767 acttaactcacgcaggggtataaaagaaaatcatgttgggcgcgagcaaaaagtgcagggggaagagcagaaatct 21153692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 18239413 - 18239539
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||| ||||| | |||| || ||||||||||||||||  ||||  ||||||||||        
T  18239413 tttgttcttcagttctgaccaccgaccaacgtgcgttagttaactcgcgcataggccattgatgcgtgacttaagtcacacagatgttataaggtgtaca 18239512  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||||||| ||| ||||||||    
T  18239513 agttaagtcacgcagcgtgacttaact 18239539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 39284014 - 39283938
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||  ||| ||||||||||||||    
T  39284014 cagtggtgcgtgacttaagtcacgcagagcttatgaggtgcgtgagttaagccacgctgcgtgacttaactcacgca 39283938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 4035156 - 4035291
Alignment:
Q  132 atttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcg 230  Q
    |||||| |||||| | | |||||| |||||| ||||  |||||||| ||||| | || |||||||||||||||||||||| |||| |||| | ||||||     
T  4035156 atttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagggattgtgaggtgca 4035255  T
Q  231 tgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||| |||  ||| |||||||||||||||    
T  4035256 tgagttaagtctcgctgcgtgacttaactcacgcag 4035291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 21613102 - 21613032
Alignment:
Q  136 gttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    ||||||||| |||||||||| | |||  |||||||||||||| |||||||||||| |||||||||||||||    
T  21613102 gttcttcagttctgaccaccggtcaagctgcgtgagttaactcgcgcacatgccaatggtgcgtgacttaa 21613032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 35126246 - 35126353
Alignment:
Q  137 ttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagat-tataaggtgcgtgagt 235  Q
    ||||| ||||| ||||||  |||||  | |||||||||||| |||||||  ||||| |||||||||||||| ||||| ||| | ||| || |||||||||    
T  35126246 ttcttgagctcagaccactggccaatctacgtgagttaactcgcgcacagaccagttgtgcgtgacttaagccatgctgagctctatcagatgcgtgagt 35126345  T
Q  236 taagtcac 243  Q
    ||||||||    
T  35126346 taagtcac 35126353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 33802966 - 33802892
Alignment:
Q  222 taaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcagagatataaaagaaaatcacgctgggcgcga 296  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||| | ||||   |||||||| ||| |||||||    
T  33802966 taaggtgcgtgagttaagtcacgctgcgtgacttaactcacgcaggggtatatttgaaaatcatgctaggcgcga 33802892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 31267974 - 31268017
Alignment:
Q  223 aaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||||||| ||| | |||||||||||||    
T  31267974 aaggtgcgtgagttaagtcacgcagcgtgagttaactcacgcag 31268017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 8727162 - 8727128
Alignment:
Q  230 gtgagttaagtcacgcaacgtaacttaactcacgc 264  Q
    ||||||||||||||||||||| |||||||||||||    
T  8727162 gtgagttaagtcacgcaacgtgacttaactcacgc 8727128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 33802923 - 33802961
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  33802923 tgcgtgagttaagtcacgcagcgtgacttaactcacgca 33802961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 1536965 - 1537006
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  1536965 ataggtgggaatggtagtataggttgtaaacaccattaatgt 1537006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 21153946 - 21153913
Alignment:
Q  20 gaatggtagtataggttataaacactattaatgt 53  Q
    ||||||||||||||||||||||||| ||||||||    
T  21153946 gaatggtagtataggttataaacacaattaatgt 21153913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 34354302 - 34354343
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||||||||||||||||||||| |||| || ||||||||    
T  34354302 ataggtgagaatggtagtataggttgtaaagaccattaatgt 34354343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 4452892 - 4452932
Alignment:
Q  229 cgtgagttaagtcacgcaacgtaacttaactcacgcagaga 269  Q
    |||||||||| |||| ||||||| |||||||||||||||||    
T  4452892 cgtgagttaactcacacaacgtatcttaactcacgcagaga 4452932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 49065557 - 49065683
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| | |||||||||||||||||||||||| ||| || ||||||||||||      
T  49065557 tttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcatagtttataaggtgcgct 49065656  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||||||||||| ||||||||    
T  49065657 agttaagtcacgcaacgtgacttaact 49065683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 9242925 - 9243057
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| |||||| ||| |||||| |||||||||||||| ||| | | || |||||||||||||||||||||| ||||||||||||||||| ||    
T  9242925 tttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcgga-aggctcagtggtgcgtgacttaagtcacgcagagattataaggtgtgt 9243023  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgca 265  Q
    ||||||||||||| |  || ||||||||||||||    
T  9243024 gagttaagtcacgtagtgtgacttaactcacgca 9243057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 2778039 - 2777925
Alignment:
Q  149 gaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaac 248  Q
    ||||||| |||||| |||||||||||||| ||||||| |||||||| | ||||||||||| | |||||  |||||||||||||||||||||||||||  |    
T  2778039 gaccaccggccaacttgcgtgagttaactcgcgcacaggccagtggcgtgtgacttaagttacgcagaacttataaggtgcgtgagttaagtcacgctgc 2777940  T
Q  249 gtaacttaactcacg 263  Q
    || ||||||||||||    
T  2777939 gtgacttaactcacg 2777925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 27761136 - 27761262
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||| || |||||| ||| ||||||||| ||||||||||| ||||| | || ||||||||||||||||||||| |||||||||||||||||||      
T  27761136 tttgttcttgagttctgactaccggccaacgtgtgtgagttaactcgcgcataggctagtggtgcgtgacttaagtcacgcagagattataaggtgcgca 27761235  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    | |||| ||||||| ||| ||||||||    
T  27761236 aattaaatcacgcagcgtgacttaact 27761262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 24608170 - 24608286
Alignment:
Q  143 agctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtca 242  Q
    |||||| |||||| |||||| |||||||||||||| |||||||| |||||| |||||||||||| |||  || |||||||||||||||  |||||||||     
T  24608170 agctctaaccaccggccaacttgcgtgagttaactcgcgcacataccagtgatgcgtgacttaactcacacaaagattataaggtgcgctagttaagtct 24608269  T
Q  243 cgcaacgtaacttaact 259  Q
    |||  ||||||||||||    
T  24608270 cgctgcgtaacttaact 24608286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 49261801 - 49261924
Alignment:
Q  143 agctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagat-tataaggtgcgtgagttaagtc 241  Q
    ||||| ||||| | |||||| |||||| ||||||||||||||||| |||||||||||||||||||||| || ||  | ||| ||||||||||||||||||    
T  49261801 agctcagaccatcggccaacctgcgtgggttaacttgcgcacatgtcagtggtgcgtgacttaagtcacgctgaactctattaggtgcgtgagttaagtc 49261900  T
Q  242 acgcaacgtaacttaactcacgca 265  Q
    | ||  ||| ||||||||||||||    
T  49261901 atgctgcgtgacttaactcacgca 49261924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 21713171 - 21713297
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||||| ||||   |||||||||||||| | ||| | |||| |||||||||||||||| || ||| |||||||||||||||      
T  21713171 tttgttcttcagctctgaccaccggccatgttgcgtgagttaactcgtgcataggccattggtgcgtgacttaagccacgcatagattataaggtgcgct 21713270  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||| ||||||  ||| ||||||||    
T  21713271 agttaaatcacgctgcgtgacttaact 21713297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 38131519 - 38131393
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| | |||||||| || |||||||||||||||||| | ||| | ||| ||||||||||||||||||||  ||||| ||| ||||||||      
T  38131519 tttgttcttcagttgtgaccaccggctaacgtgcgtgagttaactcgtgcataggcccgtggtgcgtgacttaagtcacacagaggttagaaggtgcgca 38131420  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||| ||| ||| ||||||||    
T  38131419 agttaagtcatgcagcgtgacttaact 38131393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 32935806 - 32935692
Alignment:
Q  90 gtagattgaatgttgaaaaactgaccaaataccnnnnnnnntatttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgcc 189  Q
    ||||||||||||||||||||||||||||| |||        |  |||||||||||||||| ||||| ||||||||||||||||||||| ||||| | ||     
T  32935806 gtagattgaatgttgaaaaactgaccaaagaccaaaaaacgt--ttgttcttcagctctggccaccggccaacgtgcgtgagttaactcgcgcataggca 32935709  T
Q  190 agtggtgcgtgacttaa 206  Q
    |||||||||||||||||    
T  32935708 agtggtgcgtgacttaa 32935692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 37694574 - 37694651
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||  ||| |||||||||||||||    
T  37694574 cagtggtgcgtgacttaagtcatgcagagcttgtgaggtgcgtgagttaagtcacgctgcgtgacttaactcacgcag 37694651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 42039093 - 42039021
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaag 207  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  42039093 tgttcttcagttctgaccaccggccaacgtgcgtgagttaactcgcgcacaggccagtggtgcgtgacataag 42039021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 13856070 - 13856196
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgag 234  Q
    ||||||| ||||| ||||||| |||||| |||||||||||||||| |||   ||||||| |||||||||||||||| || |||  ||| |||||  ||||    
T  13856070 tgttcttgagctcagaccaccggccaacctgcgtgagttaacttgtgcatcggccagtgatgcgtgacttaagtcacgctgag-ctattaggtggatgag 13856168  T
Q  235 ttaagtcacgcaacgtaacttaactcac 262  Q
    |||||||||||| ||| |||||||||||    
T  13856169 ttaagtcacgcagcgtgacttaactcac 13856196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 34939381 - 34939498
Alignment:
Q  150 accaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaac 248  Q
    |||||| |||||| ||||  |||||||| ||||| | || ||||| |||||||| |||||||||||||| || | ||||||||| |||||||||||| ||    
T  34939381 accaccggccaacttgcggaagttaactcgcgcataggctcagtgttgcgtgacataagtcatgcagagcttgtgaggtgcgtgtgttaagtcacgctac 34939480  T
Q  249 gtaacttaactcacgcag 266  Q
    || |||||||||||||||    
T  34939481 gtgacttaactcacgcag 34939498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 31936339 - 31936461
Alignment:
Q  143 agctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtca 242  Q
    ||||| ||||| | |||||| |||||||||||||| |||| || ||||||||||||||||||||||||  || ||   ||||||||||||||||||||||    
T  31936339 agctcagaccatcggccaacctgcgtgagttaactcgcgcccaggccagtggtgcgtgacttaagtcacacaaag-caataaggtgcgtgagttaagtca 31936437  T
Q  243 cgcaacgtaacttaactcacgcag 266  Q
     |   ||| |||||||||||||||    
T  31936438 agtcgcgtgacttaactcacgcag 31936461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 13867800 - 13867917
Alignment:
Q  144 gctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcac 243  Q
    |||| ||||| | |||||| ||||||||||| || ||||||  || |||||||||||||||||||||||| |||  ||| |||||| |||||||||||||    
T  13867800 gctcagaccatcggccaacttgcgtgagttagctcgcgcaccggctagtggtgcgtgacttaagtcatgctgag-ctattaggtgcatgagttaagtcac 13867898  T
Q  244 gcaacgtaacttaactcac 262  Q
    ||| ||| |||| ||||||    
T  13867899 gcagcgtgactttactcac 13867917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 42119056 - 42118922
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| |||||| ||||  |||||||| ||| | | || |||||||||||||||||||||| |||||  || | ||||| ||    
T  42119056 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcagaacttgtgaggtgtgt 42118957  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||||| ||| |||||||||||||||    
T  42118956 gagttaagtcacgcagcgtgacttaactcacgcag 42118922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 52789477 - 52789344
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | ||||||  ||||| ||||  |||||||| ||||| | || |||||||||||||||||||||| |||||| || | ||||||||    
T  52789477 tttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagtttgtgaggtgcgt 52789378  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgca 265  Q
    | ||||||| |||| || | ||||||||||||||    
T  52789377 gtgttaagtgacgctacttgacttaactcacgca 52789344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 372774 - 372703
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    ||||||| ||||| ||||||| |||||| ||||||  ||||||  |||||||||||||||||||||||||||    
T  372774 tgttcttgagctcagaccaccggccaacctgcgtggattaactcacgcacatgccagtggtgcgtgacttaa 372703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 14289790 - 14289680
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||| ||||||||||||||||  |||| || | |||||||||| ||||| |   |||||||| |||||||||||||  || | |||||||||||||      
T  14289790 tttgtttttcagctctgaccaccgaccaaggtacatgagttaactcgcgcatagatcagtggtgtgtgacttaagtcacacatatattataaggtgcgct 14289691  T
Q  233 agttaagtcac 243  Q
    |||||||||||    
T  14289690 agttaagtcac 14289680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 31823089 - 31823045
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaact 177  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  31823089 tttgttcttcagttctgaccaccggccaacgtgcgtgagttaact 31823045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 40962703 - 40962782
Alignment:
Q  137 ttcttcagctctgacca-ccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcag 215  Q
    ||||| ||||||||||| || |||||| |||||||||||||| | ||| |||||||||||| ||||||||| ||| ||||    
T  40962703 ttcttgagctctgaccaaccggccaacctgcgtgagttaactcgtgcaaatgccagtggtgtgtgacttaactcacgcag 40962782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 54703663 - 54703528
Alignment:
Q  188 ccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcagagatataaaagaaaatcacgc 287  Q
    ||||||||||| ||||||||||| |||||| || | ||||||||  |||||||| |||  ||| ||||||||||||||| | ||||   |||||    ||    
T  54703663 ccagtggtgcgcgacttaagtcacgcagagcttgtgaggtgcgtatgttaagtctcgctgcgttacttaactcacgcagggttatatttgaaaaaagtgc 54703564  T
Q  288 tgggcgcgaacaaaaaatgcagggggaagagcagaa 323  Q
     |||||||| |||||  ||||||| |||||||||||    
T  54703563 agggcgcgagcaaaatgtgcagggtgaagagcagaa 54703528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 32935884 - 32935843
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  32935884 ataggtgggaatggtagtataggttataaacaccattaatgt 32935843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 43139660 - 43139623
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacgc 264  Q
    |||||||||||||||||||| |||||||||||||||||    
T  43139660 tgcgtgagttaagtcacgcagcgtaacttaactcacgc 43139623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 37694650 - 37694612
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  37694650 tgcgtgagttaagtcacgcagcgtgacttaactcacgca 37694612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 40221041 - 40220991
Alignment:
Q  135 tgttcttcagctctgacca-ccagccaacgtgcgtgagttaacttgcgcac 184  Q
    ||||||| ||||||||||| || |||||| |||||||||||||||||||||    
T  40221041 tgttcttgagctctgaccaaccggccaacttgcgtgagttaacttgcgcac 40220991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 8932589 - 8932545
Alignment:
Q  198 gtgacttaagtcatgcagagattataaggtgcgtgagttaagtcac 243  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||    
T  8932589 gtgacttaagtcacgcagagct-ataaggtgcgtgagttaagtcac 8932545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 36174298 - 36174339
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  36174298 ataggtgggaatggtagtataggttgtaaacaccattaatgt 36174339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 273
Target Start/End: Original strand, 43502290 - 43502431
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| |||||| ||||  |||||||| ||||| | || |||||||||| ||||||||||| |||||| || | |||||||     
T  43502290 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgcgacttaagtcacgcagagcttgtgaggtgcgc 43502389  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcagagatata 273  Q
      ||||| || |||  ||| ||||||||| ||||||| ||||    
T  43502390 atgttaaatctcgctgcgttacttaactcgcgcagagttata 43502431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 46814210 - 46814169
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  46814210 ataggtgggaatggtagtataggttgtaaacaccattaatgt 46814169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 47043708 - 47043749
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  47043708 ataggtgggaatggtagtataggttgtaaacaccattaatgt 47043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 53266130 - 53266089
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  53266130 ataggtgggaatggtagtataggttgtaaacaccattaatgt 53266089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 2777925 - 2777961
Alignment:
Q  229 cgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  2777925 cgtgagttaagtcacgcagcgtgacttaactcacgca 2777961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 14329065 - 14329021
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaact 177  Q
    |||||| ||||||||||||||||| |||| || ||||||||||||    
T  14329065 tttgtttttcagctctgaccaccaaccaaggtacgtgagttaact 14329021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 132 - 274
Target Start/End: Complemental strand, 6463077 - 6462935
Alignment:
Q  132 atttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||| |||| | |||||| |||||| ||||||||||||||  | |||||||||||||||||||||||||||||  || || |||||||||||||    
T  6463077 atttgttcttgagctttaaccaccggccaacttgcgtgagttaactcacacacatgccagtggtgcgtgacttaagtcacacaaagcttataaggtgcgt 6462978  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcagagatataa 274  Q
    ||||||||||||||||||| ||||||||| | ||| |||||||    
T  6462977 gagttaagtcacgcaacgtgacttaactcccacagtgatataa 6462935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 6755723 - 6755848
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgag 234  Q
    ||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||||||  || || ||||||||||||||||    
T  6755723 tgttcttgagctctaaccaccggccaacttgcgtgagttaactcgcgcacatgccagtggtgtgtgacttaagtcacacaaagcttataaggtgcgtgag 6755822  T
Q  235 ttaagtcacgcaacgtaacttaactc 260  Q
    |||||||||||| ||| |||||||||    
T  6755823 ttaagtcacgcagcgtgacttaactc 6755848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 48086915 - 48086797
Alignment:
Q  141 tcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagt 240  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  48086915 tcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcatgcagaggttataaggtgcgcaagttaagt 48086816  T
Q  241 cacgcaacgtaacttaact 259  Q
    ||||||  || ||||||||    
T  48086815 cacgcagtgtgacttaact 48086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 39415426 - 39415302
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||| |||| | |||||||||||||||||||||  |||||| |||||||||||||||||||||||| |||||| ||||||||||||      
T  39415426 tttgttcttcagttctaaccatcggccaacgtgcgtgagttaactcacgcacaggccagtggtgcgtgacttaagtcacgcagaggttataaggtgcgca 39415327  T
Q  233 agttaagtcacgcaacgtaacttaa 257  Q
    |||||||||||||| ||| ||||||    
T  39415326 agttaagtcacgcagcgtgacttaa 39415302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 25574907 - 25574795
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||||||||||  |||||||||||||||||||| ||||| | ||||||||||||||||||||||||  ||||| ||| |||||||       
T  25574907 tttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacacagaggttacaaggtgcaca 25574808  T
Q  233 agttaagtcacgc 245  Q
    |||||||||||||    
T  25574807 agttaagtcacgc 25574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 50561520 - 50561394
Alignment:
Q  137 ttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagtt 236  Q
    ||||| ||||| |||||||  |||||  ||||||||||||| ||||||| || |||||||| ||||||||||||||| |||  ||| |||| ||||||||    
T  50561520 ttcttgagctcagaccaccgaccaacccgcgtgagttaactcgcgcacaggcaagtggtgcatgacttaagtcatgctgag-ctattaggtacgtgagtt 50561422  T
Q  237 aagtcacgcaacgtaacttaactcacgc 264  Q
    ||||||| |||||| |||||||||||||    
T  50561421 aagtcacacaacgtgacttaactcacgc 50561394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Original strand, 47560397 - 47560512
Alignment:
Q  151 ccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtga----cttaagtcatgcagagattataaggtgcgtgagttaagtcacgca 246  Q
    ||||| ||||||||||||||||||| | | || || | |||||||||||||    ||||||||| |||||  |||||||||| ||||||||||||||||     
T  47560397 ccaccggccaacgtgcgtgagttaaatcgtgcccaagtcagtggtgcgtgagtgacttaagtcacgcagaacttataaggtgtgtgagttaagtcacgcg 47560496  T
Q  247 acgtaacttaactcac 262  Q
     ||| |||||||||||    
T  47560497 gcgtgacttaactcac 47560512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 49742161 - 49742231
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaact 259  Q
    |||||||||||||||||||||| |||||| || | ||||||||||||||||||||||  ||| ||||||||    
T  49742161 cagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtcacgctgcgtgacttaact 49742231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 53401547 - 53401613
Alignment:
Q  200 gacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||| |||||| |||| |||||||||||||||||| |||  |||||||||||||||||||    
T  53401547 gacttaagtcacgcagagcttatgaggtgcgtgagttaagtctcgctgcgtaacttaactcacgcag 53401613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 14995265 - 14995140
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcaca-tgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtga 233  Q
    |||||||||| |||| | ||  ||||| ||||||||||||||| ||||| | || |||||||| ||||||||| |||  || ||||||||||||| || |    
T  14995265 tgttcttcagttctggctactggccaatgtgcgtgagttaactcgcgcaaaatgtcagtggtgtgtgacttaactcacacaaagattataaggtgtgtta 14995166  T
Q  234 gttaagtcacgcaacgtaacttaact 259  Q
    ||||||||||||  ||| ||||||||    
T  14995165 gttaagtcacgctgcgtgacttaact 14995140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 49501594 - 49501671
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||||| |||||| || | |||||||||||||||||| |||   || |||||||||||||||    
T  49501594 cagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaactcacgcag 49501671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 8189165 - 8189241
Alignment:
Q  252 acttaactcacgcagagatataaaagaaaatcacgctgggcgcgaacaaaaaatgc-agggggaagagcagaaatct 327  Q
    ||||||||||||||| | |||||||| |||||| | ||||||||| |||||| ||| ||||||||||||||||||||    
T  8189165 acttaactcacgcaggggtataaaaggaaatcatgttgggcgcgagcaaaaagtgcaagggggaagagcagaaatct 8189241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 2182556 - 2182627
Alignment:
Q  194 gtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    ||||||||||||| ||| |||||| ||||||||||||  |||||||||||||| ||| |||||||| |||||    
T  2182556 gtgcgtgacttaaatcaagcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaacttacgca 2182627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 23029672 - 23029602
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaact 259  Q
    ||||||||| |||||||||||| ||| || |||| || |||||||||||||||||||  ||| ||||||||    
T  23029672 cagtggtgcatgacttaagtcacgcaaagcttatgagatgcgtgagttaagtcacgctgcgtgacttaact 23029602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 8628551 - 8628438
Alignment:
Q  90 gtagattgaatgttgaaaaactgaccaaataccnnnnnnnntatttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgcc 189  Q
    ||||||||||||||||||||||||||||| ||           |||||||||||| ||||| |||| ||| || ||||||||||||||||| |||   ||    
T  8628551 gtagattgaatgttgaaaaactgaccaaagactaaaaatcc--tttgttcttcagttctgatcaccggcc-acctgcgtgagttaacttgcccaccaacc 8628455  T
Q  190 agtggtgcgtgacttaa 206  Q
    |||||||||||||||||    
T  8628454 agtggtgcgtgacttaa 8628438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 25745146 - 25745253
Alignment:
Q  135 tgttcttcagctctgaccac-cagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtga 233  Q
    ||||||| |||||||||||  | |||||| |||||||||||||| | |||   ||||  || ||||||||||||||| |||||| | |||||||| ||||    
T  25745146 tgttcttgagctctgaccaatcggccaacctgcgtgagttaactcgtgcagcggccaaaggagcgtgacttaagtcacgcagagct-ataaggtgtgtga 25745244  T
Q  234 gttaagtca 242  Q
    |||||||||    
T  25745245 gttaagtca 25745253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 36182819 - 36182858
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  36182819 tgcgtgagttaagtcacgcagcgtgacttaactcacgcag 36182858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 50561676 - 50561718
Alignment:
Q  231 tgagttaagtcacgcaacgtaacttaactcacgcagagatata 273  Q
    |||||||||||||||| ||| |||||||||||||||| |||||    
T  50561676 tgagttaagtcacgcagcgtgacttaactcacgcagaaatata 50561718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 35485604 - 35485563
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  35485604 ataggtgggaatggtagtataggttgtaaacaccattaatgt 35485563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 37282182 - 37282223
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcg 230  Q
    |||||||||||||||||||||| ||| || ||||||||||||    
T  37282182 cagtggtgcgtgacttaagtcacgcaaagcttataaggtgcg 37282223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 42947723 - 42947682
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  42947723 ataggtgggaatggtagtataggttgtaaacaccattaatgt 42947682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 53824650 - 53824609
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  53824650 ataggtgggaatggtagtataggttgtaaacacgattaatgt 53824609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 2325331 - 2325375
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgttgt 56  Q
    ||||||| |||||||||||| |||| ||||||| |||||||||||    
T  2325331 ataggtgggaatggtagtattggttgtaaacaccattaatgttgt 2325375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 7956293 - 7956393
Alignment:
Q  159 caacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaac 258  Q
    |||| ||| |||||||||| ||||||||| |||||||| ||| ||||| ||| ||| |   |||||||||||  |||||||||| ||  ||| |||||||    
T  7956293 caacctgcatgagttaactcgcgcacatgtcagtggtgtgtgtcttaactcacgcacaccatataaggtgcgctagttaagtcatgctgcgtgacttaac 7956392  T
Q  259 t 259  Q
    |    
T  7956393 t 7956393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 29908583 - 29908457
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||| |||||| |||||||||| |||||||||| ||||| | |||||||| ||||||||||||||| |||||| ||||||||||||      
T  29908583 tttgttcttcagttctaaccaccggccaacgtgcatgagttaactcgcgcataggccagtggcgcgtgacttaagtcacgcagaggttataaggtgcgca 29908484  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||||||| ||||||||||||    
T  29908483 agttaagtcacgcagcgtaacttaact 29908457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 29132641 - 29132774
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||  |||||||||||||     
T  29132641 tttgttcttcagctctgaccaccggccaacgtgcgtgagttaactcgcgcataggccggtggtgcgtgacttaagtcacgtagaacttataaggtgcgtt 29132740  T
Q  233 agttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||   ||| |||||||| ||||||    
T  29132741 agttaagtcacgttgcgtgacttaactaacgcag 29132774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 6903722 - 6903854
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| |||||||||| |||||  || ||||||||||| ||||||  ||||||||||||||||||||| || ||| |||||||| ||||| ||    
T  6903722 tttgttcttcagttctgaccaccggccaaa-tgtgtgagttaactcgcgcaccggccagtggtgcgtgacttaagccacgcatagattatatggtgcatg 6903820  T
Q  233 agttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||| ||| |||||||||||||||    
T  6903821 agttaagtcacgcagcgtgacttaactcacgcag 6903854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 12874323 - 12874212
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||||||| ||||||   |||  |||||||||||||| ||||| | | |||||||||||||||||||||| | ||||||||||||| |||      
T  12874323 tttgttcttcagctcttaccaccgctcaagttgcgtgagttaactcgcgcataggtcagtggtgcgtgacttaagtcacgtagagattataaggcgcgct 12874224  T
Q  233 agttaagtcacg 244  Q
     |||||||||||    
T  12874223 ggttaagtcacg 12874212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 8556320 - 8556207
Alignment:
Q  131 tatttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcg 230  Q
    ||||||||||||||||||||||||| ||||  ||| |||||| |||| | ||| | | || || ||||||||||||||||  || |||||||||||||||    
T  8556320 tatttgttcttcagctctgaccaccggccatggtgtgtgagtaaactcgtgcatagggcattgatgcgtgacttaagtcacacatagattataaggtgcg 8556221  T
Q  231 tgagttaagtcacg 244  Q
      ||||||||||||    
T  8556220 ccagttaagtcacg 8556207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 28266087 - 28266018
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgac 202  Q
    ||||||||||  |||||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||    
T  28266087 tttgttcttcgtctctgaccaccgatcaacgtgcgtgagttaactcgcgcacatgtcagtggtgcgtgac 28266018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 37057223 - 37057167
Alignment:
Q  190 agtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgca 246  Q
    ||||||||||||||||||||| |||||| || | |||||||||||||||||||||||    
T  37057223 agtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtcacgca 37057167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 4616643 - 4616773
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| |||||| ||||  |||||||| ||| | | || |||||| ||||||||||||||| |||||| || | | ||||||    
T  4616643 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggggcgtgacttaagtcacgcagagcttgtgaagtgcgt 4616742  T
Q  232 gagttaagtcacgcaacgtaacttaactcac 262  Q
    |||||||||||| || ||| |||||||||||    
T  4616743 gagttaagtcacacagcgtgacttaactcac 4616773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 323
Target Start/End: Original strand, 41192445 - 41192579
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcagagatataaaagaaaatcacgct 288  Q
    |||||||| |||||||||||||  ||||| || | |||||||||||||||||| |||  ||| ||||||||||||||| | ||||   | |||    ||     
T  41192445 cagtggtgtgtgacttaagtcacacagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttggaaaaagtgca 41192544  T
Q  289 gggcgcgaacaaaaaatgcagggggaagagcagaa 323  Q
    ||||||||||||||  ||||||| |||||||||||    
T  41192545 gggcgcgaacaaaatgtgcagggtgaagagcagaa 41192579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 16710243 - 16710335
Alignment:
Q  167 gtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaact 259  Q
    ||||||||||| | ||||||| |||||||||||||||||| ||| |||||   |||||| ||||| |||||||||| ||  ||| ||||||||    
T  16710243 gtgagttaactcgtgcacatgtcagtggtgcgtgacttaactcacgcagaacatataagatgcgttagttaagtcatgctgcgtgacttaact 16710335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 5814540 - 5814675
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaa-gtcatgcagagattataaggtgcg 230  Q
    ||||| |||||| | | |||||| |||||| ||||  |||||||| ||| | | || |||| ||||||||||||| |||| |||||| || | |||||||    
T  5814540 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtataggctcagtagtgcgtgacttaaagtcacgcagagcttgtgaggtgcg 5814639  T
Q  231 tgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||| |||  ||| |||||||||||||||    
T  5814640 tgagttaagtctcgctgcgtgacttaactcacgcag 5814675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 5290762 - 5290839
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||||| |||||| ||   |||| | ||||||||||||| || ||| ||||||| |||||||    
T  5290762 cagtggtgcgtgacttaagtcacgcagagcttgagaggtacatgagttaagtcacacagcgtgacttaacccacgcag 5290839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 21083833 - 21083716
Alignment:
Q  150 accaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaac 248  Q
    |||||| |||||| ||||  |||||||||||||| | || |||| ||  ||||||||||||| |||||| || | || ||||||||||||||| | |  |    
T  21083833 accaccggccaacttgcgcaagttaacttgcgcagaggctcagttgtaagtgacttaagtcacgcagagcttgtgagatgcgtgagttaagtctcactgc 21083734  T
Q  249 gtaacttaactcacgcag 266  Q
    || |||||||||||||||    
T  21083733 gtgacttaactcacgcag 21083716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 25686072 - 25686109
Alignment:
Q  146 tctgaccaccagccaacgtgcgtgagttaacttgcgca 183  Q
    |||||||||||||||||||||||||||||||| |||||    
T  25686072 tctgaccaccagccaacgtgcgtgagttaactcgcgca 25686109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 30398257 - 30398213
Alignment:
Q  222 taaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||    
T  30398257 taaggtgtgtgagttaagtcacgcatcgtgacttaactcacgcag 30398213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 30398431 - 30398475
Alignment:
Q  222 taaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||    
T  30398431 taaggtgtgtgagttaagtcacgcaacatgacttaactcacgcag 30398475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 1887867 - 1887905
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  1887867 tgcgtgagttaagtcacgcaacgtcacttaacacacgca 1887905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 1887936 - 1887867
Alignment:
Q  196 gcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    ||||||||||||||| |||||| || | ||||||||| ||||||| |||   ||| ||||||||||||||    
T  1887936 gcgtgacttaagtcacgcagagcttgtgaggtgcgtgtgttaagtgacgttgcgtgacttaactcacgca 1887867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 11713317 - 11713276
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  11713317 ataggtgggaatggtagtataggttgtaaacaccattaatgt 11713276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 13785124 - 13785051
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    ||||||| | ||||| ||||| | ||||||||||||||||||||| || |  | |||| |||||||||||||||    
T  13785124 tttgttcatgagctcagaccatcggccaacgtgcgtgagttaactcgcacttaggccaatggtgcgtgacttaa 13785051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 34619963 - 34620020
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgca 246  Q
    |||| ||||||||||||||||| |||||| || | |||||||||| |||| |||||||    
T  34619963 cagtagtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgacttaactcacgca 34620020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 2195229 - 2195313
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcagagatata 273  Q
    |||||||||| ||||||| || ||||||| || | |||| ||||||||||||||||   |||   ||||||||||||||| ||||    
T  2195229 cagtggtgcgagacttaaatcgtgcagagcttgtgaggtacgtgagttaagtcacgttgcgtgtgttaactcacgcagagttata 2195313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 32737934 - 32737990
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgc 245  Q
    |||||||||||||||||||||| ||| |  |||||||||||||   |||||||||||    
T  32737934 cagtggtgcgtgacttaagtcacgcacaacttataaggtgcgtttattaagtcacgc 32737990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 13312667 - 13312535
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| |||||||| | |||||||| |||||||||||| | || || ||||||||| |||||||||||||| |||||| |||||||||||||     
T  13312667 tttgttcttcagttctgaccatcggccaacgtacgtgagttaactcgtgcccaggccagtggttcgtgacttaagtcacgcagagcttataaggtgcgtt 13312568  T
Q  233 agttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||| ||| |||||||| |||||    
T  13312567 agttaagtcacgcagcgtgacttaactaacgca 13312535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 23912260 - 23912366
Alignment:
Q  137 ttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagtt 236  Q
    ||||| |||||| |||||| |||||| ||||||| |||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  23912260 ttcttgagctctaaccaccggccaacttgcgtgaattaactcgcgcacatgccagtggtgcatgacttaagtcacgcagagcttataaggtgcgtgagtt 23912359  T
Q  237 aagtcac 243  Q
    |||||||    
T  23912360 aagtcac 23912366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 319305 - 319179
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||| |  |||||||||| ||||||||||||  ||||| ||||||||||||      
T  319305 tttgttcttcagttctgaccaccacccaacgtgcgtgagttaactcgcgcatagaccagtggtgcatgacttaagtcacacagaggttataaggtgcgca 319206  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||| | || || ||| ||||||||    
T  319205 agttaaattacacagcgtgacttaact 319179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 17399098 - 17399035
Alignment:
Q  149 gaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatg 212  Q
    ||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||| |||||    
T  17399098 gaccaccggccaacttgcgtgagttaactcgcacacatgccagtggtgcgtgacttaactcatg 17399035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 30634177 - 30634254
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||||| | |||| || | |||||||||||||||||| |||  ||| |||||||||||||||    
T  30634177 cagtggtgcgtgacttaagtcacgtagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcag 30634254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 24173638 - 24173565
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    |||||||||||| ||||||  || |||||| |||||||||||||||||  ||| | ||||||||||||||||||    
T  24173638 tttgttcttcagttctgacagccggccaacatgcgtgagttaacttgcagacaagtcagtggtgcgtgacttaa 24173565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 9521462 - 9521402
Alignment:
Q  164 tgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataa 224  Q
    |||| ||||||| | ||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9521462 tgcgggagttaagtcgcgaacatgccagtggtgcgtgacttaagtcacgcagagcttataa 9521402  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 9521449 - 9521520
Alignment:
Q  252 acttaactcacgcagagatataaaagaaaatcacgctgggcgcgaacaaaaaatgcagggggaagagcagaa 323  Q
    ||||||||| ||||| | ||||| |  |||||| ||||||||||| |||||| |||||||||||||||||||    
T  9521449 acttaactcccgcaggggtataacaagaaatcatgctgggcgcgagcaaaaagtgcagggggaagagcagaa 9521520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 11599101 - 11598967
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| |||||| ||||  |||||||| ||||| | || | ||||||| |||||||||||| |||||| || | ||||||||    
T  11599101 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcggtggtgcatgacttaagtcacgcagagcttgtgaggtgcgt 11599002  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||| |||   || | |||||||||||||    
T  11599001 gagttaagtctcgcggtgtgagttaactcacgcag 11598967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 1077664 - 1077584
Alignment:
Q  181 gcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcac 262  Q
    ||||| ||||||||||||| |||||| ||| ||||| | |||||| |||||||||||||| ||||  ||| |||||||||||    
T  1077664 gcacaggccagtggtgcgtaacttaaatcacgcaga-actataagctgcgtgagttaagttacgctgcgtgacttaactcac 1077584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 1077584 - 1077620
Alignment:
Q  230 gtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1077584 gtgagttaagtcacgcagcgtaacttaactcacgcag 1077620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 2419802 - 2419846
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaact 177  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||    
T  2419802 tttgttcttcagttctgaccaccggccaacttgcgtgagttaact 2419846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 3515280 - 3515334
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcac 243  Q
    |||||||||||||||||||||| ||| || || | | ||||||||||||||||||    
T  3515280 cagtggtgcgtgacttaagtcacgcaaagcttgtgaagtgcgtgagttaagtcac 3515334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 11718538 - 11718579
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||||||||||||||||| |||||||| || ||||||||    
T  11718538 ataggtgagaatggtagtataagttataaataccattaatgt 11718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 11718687 - 11718716
Alignment:
Q  157 gccaacgtgcgtgagttaacttgcgcacat 186  Q
    ||||||||||||||||||||||||||||||    
T  11718687 gccaacgtgcgtgagttaacttgcgcacat 11718716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 16444625 - 16444584
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  16444625 ataggtgggaatggtagtataggttgtaaacaccattaatgt 16444584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 11718616 - 11718644
Alignment:
Q  90 gtagattgaatgttgaaaaactgaccaaa 118  Q
    |||||||||||||||||||||||||||||    
T  11718616 gtagattgaatgttgaaaaactgaccaaa 11718644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 3660183 - 3660295
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| | |||| ||||||||||||||||||| |||||| ||||||||||||      
T  3660183 tttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcgcataggccaatggtgcgtgacttaagtcacgcagagcttataaggtgcgct 3660282  T
Q  233 agttaagtcacgc 245  Q
    |||||||||||||    
T  3660283 agttaagtcacgc 3660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 48566838 - 48566706
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||  |||||||||||||||| ||| || |||||||||  |      
T  48566838 tttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggccagtaatgcgtgacttaagtcacgcaaaggttataaggtctgca 48566739  T
Q  233 agttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||||| |||||||| |||||    
T  48566738 agttaagtcacgcaacgtgacttaacttacgca 48566706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 21482986 - 21482874
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| | ||| | || ||||||||||||||||||||| |||||| |||||||||| ||     
T  21482986 tttgttcttcagctctgaccatcggccaacgtgcgtgagttaactcgtgcataggctagtggtgcgtgacttaagtcacgcagagcttataaggtgtgtt 21482887  T
Q  233 agttaagtcacgc 245  Q
    |||||||||||||    
T  21482886 agttaagtcacgc 21482874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 5770578 - 5770696
Alignment:
Q  143 agctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtca 242  Q
    |||||| |||||| |||| | ||||||||||| || ||||||| ||||||||||||||||||||| || ||| || ||||||||||||||||||||||||    
T  5770578 agctctaaccaccggccaccttgcgtgagttagctcgcgcacaggccagtggtgcgtgacttaagccacgcaaagcttataaggtgcgtgagttaagtca 5770677  T
Q  243 cgcaacgtaacttaactca 261  Q
    |||| ||| ||||||||||    
T  5770678 cgcagcgtgacttaactca 5770696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 41871813 - 41871687
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||  ||||| ||||||||||||      
T  41871813 tttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcgcgcataggccagtggtgcgttacttaagtcacacagaggttataaggtgcgca 41871714  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||| ||| ||| ||||||||    
T  41871713 agttaagtcatgcagcgtgacttaact 41871687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 18843986 - 18844110
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgag 234  Q
    |||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||   ||||| ||| || ||    
T  18843986 tgttcttcagttctgatcaccggccaacgtgcgtgagttaacttgcgcacataccagtggtgtgtgacttaagtcacgcagaacatataaagtgtgttag 18844085  T
Q  235 ttaagtcacgcaacgtaacttaact 259  Q
    |||||||| ||  ||||||||||||    
T  18844086 ttaagtcaggcggcgtaacttaact 18844110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 46923858 - 46923747
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||| ||||||||||| | ||  ||||||||||||||| ||||| | |||| ||||||||||||||||||| ||| |||||||||||||||      
T  46923858 tttgttcttcatctctgaccaccggacatggtgcgtgagttaactcgcgcataggccattggtgcgtgacttaagtcacgcatagattataaggtgcgct 46923759  T
Q  233 agttaagtcacg 244  Q
    ||||||||||||    
T  46923758 agttaagtcacg 46923747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 39222783 - 39222657
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||||||||||||||  |||  ||||||||||||||| | ||| | |||| ||||||||||||||||||| ||| ||||||||||| |||      
T  39222783 tttgttcttcagctctgaccaccgaccatggtgcgtgagttaactcgtgcataggccattggtgcgtgacttaagtcacgcatagattataaggcgcgct 39222684  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||||||  ||| ||||||||    
T  39222683 agttaagtcacgctgcgtgacttaact 39222657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 47983760 - 47983650
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgag 234  Q
    ||||||| || |||||||||| |||||||||||| |||||||| |||||||||||||||||  ||||||||| ||| |||||   |||||||||||| ||    
T  47983760 tgttctttagttctgaccaccggccaacgtgcgtcagttaactcgcgcacatgccagtggtaagtgacttaactcacgcagaacatataaggtgcgttag 47983661  T
Q  235 ttaagtcacgc 245  Q
    |||||||||||    
T  47983660 ttaagtcacgc 47983650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 5766863 - 5766961
Alignment:
Q  167 gtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    ||||||||||| ||||||| ||||||||||||||||||||| || ||| || |||||||||| |||||||||| || ||| ||| ||||||||||||||    
T  5766863 gtgagttaactcgcgcacaggccagtggtgcgtgacttaagccacgcaaagcttataaggtgtgtgagttaagccatgcagcgtgacttaactcacgca 5766961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 10308537 - 10308421
Alignment:
Q  150 accaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacg 249  Q
    |||||| |||||| ||||  ||||||||  |||||||||||||||||||||||||||||||  || || || | |||||||||||||||||| |||  ||    
T  10308537 accaccggccaacttgcgcaagttaactcacgcacatgccagtggtgcgtgacttaagtcacacaaagcttgtgaggtgcgtgagttaagtctcgctgcg 10308438  T
Q  250 taacttaactcacgcag 266  Q
    | |||||||||||||||    
T  10308437 tgacttaactcacgcag 10308421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 23602987 - 23603096
Alignment:
Q  157 gccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagat-tataaggtgcgtgagttaagtcacgcaacgtaactt 255  Q
    |||||| |||| ||||||||| ||||||| || ||| ||||||||||||||||| || ||||| ||| || |||  ||||||||||||||||||| ||||    
T  23602987 gccaacctgcgcgagttaactcgcgcacaagctagttgtgcgtgacttaagtcacgctgagatatattagatgcacgagttaagtcacgcaacgtgactt 23603086  T
Q  256 aactcacgca 265  Q
    ||||||||||    
T  23603087 aactcacgca 23603096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 49597273 - 49597196
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtca 210  Q
    ||||||||| || ||||||||||  |||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  49597273 tttgttctttagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtca 49597196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 1671331 - 1671460
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| | ||||||||  ||||| |||||| ||||||| ||||| | || ||||||| ||||||||||||| |||| |  || ||||||||||    
T  1671331 tttgttcttcagttttgaccaccgaccaacttgcgtgcgttaactcgcgcagaggctcagtggttcgtgacttaagtcctgcaaaacttgtaaggtgcgt 1671430  T
Q  232 gagttaagtcacgcaacgtaacttaactca 261  Q
    || |||||||||||  ||| ||||||||||    
T  1671431 gaattaagtcacgctgcgtgacttaactca 1671460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 30858578 - 30858446
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||||| |||||||| |||||| |||| ||||||||| ||| | | || || ||||   ||||||||||||  ||||| || ||||||||||    
T  30858578 tttgttcttcagctttgaccaccggccaacttgcgcgagttaactcgcgtagaggctcaatggtttatgacttaagtcacacagagcttgtaaggtgcgt 30858479  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgc 264  Q
    ||||||||||||||  | | |||||||||||||    
T  30858478 gagttaagtcacgctgcatgacttaactcacgc 30858446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 33686548 - 33686684
Alignment:
Q  132 atttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcg 230  Q
    |||||| |||||| | | |||||| |||||| | ||  |||||||| ||||| | || |||||||||||||||||||||| ||| || || | |||||||    
T  33686548 atttgtgcttcagtttttaccaccggccaacttacgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaaagcttgtgaggtgcg 33686647  T
Q  231 tgagttaagtcacgcaacgtaacttaactcacgcaga 267  Q
    ||||||||||| |||  ||| ||||||||||||||||    
T  33686648 tgagttaagtctcgctgcgtgacttaactcacgcaga 33686684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 7014779 - 7014912
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgcc-agtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| |||||| ||||  |||||||| ||||| ||||  ||||||||||||||||||||| | |||| || | ||||||||    
T  7014779 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcatatgcttagtggtgcgtgacttaagtcacgtagagcttgtgaggtgcgt 7014878  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||| |||   || ||||||||||||||    
T  7014879 gagttaagtctcgctgtgtgacttaactcacgca 7014912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 20447247 - 20447122
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| ||||||||||  |||||  ||||||||||||| ||||  | || ||| ||||||| |||||||||| ||| ||  ||||| ||| ||    
T  20447247 tttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcaggggtgcgtaacttaagtcacgcaaag-ctataacgtgtgt 20447149  T
Q  232 gagttaagtcacgcaacgtaacttaac 258  Q
    ||||||||||||||| ||| |||||||    
T  20447148 gagttaagtcacgcagcgtgacttaac 20447122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 20533010 - 20532885
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| ||||||||||  |||||  ||||||||||||| ||||  | || ||| ||||||| |||||||||| ||| ||  ||||| ||| ||    
T  20533010 tttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcaggggtgcgtaacttaagtcacgcaaag-ctataacgtgtgt 20532912  T
Q  232 gagttaagtcacgcaacgtaacttaac 258  Q
    ||||||||||||||| ||| |||||||    
T  20532911 gagttaagtcacgcagcgtgacttaac 20532885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 18178973 - 18178887
Alignment:
Q  158 ccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgca 246  Q
    ||||| ||||||||||||||||||| |||| ||||| ||| ||||||||||||  || || |||| ||||||||||||||| |||||||    
T  18178973 ccaacctgcgtgagttaacttgcgctcatgtcagtgatgcatgacttaagtcacacaaag-ttat-aggtgcgtgagttaaatcacgca 18178887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 12926886 - 12926775
Alignment:
Q  156 agccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaact 254  Q
    ||||||| ||||  |||||||| ||||| | || ||||||||| |||||||||||  |||||| || | |||||| ||||||||||| |||  ||| |||    
T  12926886 agccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcgcgcagagcttgtgaggtgcatgagttaagtctcgctgcgtgact 12926787  T
Q  255 taactcacgcag 266  Q
    ||||||||||||    
T  12926786 taactcacgcag 12926775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 22605460 - 22605389
Alignment:
Q  192 tggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacg 263  Q
    ||||||||||||||||||| | |||| || | |||||||||| |||||||||||  ||  ||||||||||||    
T  22605460 tggtgcgtgacttaagtcacgtagagcttgtgaggtgcgtgacttaagtcacgctgcgcgacttaactcacg 22605389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 46178721 - 46178671
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgca 183  Q
    |||||||||||| |||||||||| | |||| |||||||||||||| |||||    
T  46178721 tttgttcttcagttctgaccaccggtcaacatgcgtgagttaactcgcgca 46178671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 11012216 - 11012143
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    ||||||| | |||||  |||||| |||||||||||||||||||||  ||| || |||||||||| | |||||||    
T  11012216 tttgttcatgagctcataccaccggccaacgtgcgtgagttaactcacgcccaggccagtggtgtgcgacttaa 11012143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 26013689 - 26013762
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    |||||||||||| |||||||||| |  ||||| || ||||||||  |||||||   ||||||||||||||||||    
T  26013689 tttgttcttcagttctgaccaccgggtaacgtacgcgagttaacccgcgcacagatcagtggtgcgtgacttaa 26013762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 47485747 - 47485706
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  47485747 ataggtgggaatggtagtataggttgtaaacaccattaatgt 47485706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 50065822 - 50065781
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  50065822 ataggtgggaatggtagtataggttgtaaacaccattaatgt 50065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 34471599 - 34471724
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||| ||||| | |||| ||||||||||||||||||| ||| || ||||||||||||      
T  34471599 tttgttcttcagttctaaccaccggccaacgtgcgtgagttaactcgcgcata-gccaatggtgcgtgacttaagtcacgcatagtttataaggtgcgca 34471697  T
Q  233 agttaagtcacgcaacgtaacttaact 259  Q
    |||||||||||||| ||| ||||||||    
T  34471698 agttaagtcacgcagcgtgacttaact 34471724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 23542749 - 23542862
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| ||||| | ||||||||||||||| |||||||| |||||| ||||| |||| ||     
T  23542749 tttgttcttcagttctgaccaccgaccaacgtgcatgagttaactcgcgcataggccagtggtgcgtgaattaagtcacgcagagcttatacggtgtgtt 23542848  T
Q  233 agttaagtcacgca 246  Q
    | ||||||||||||    
T  23542849 atttaagtcacgca 23542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 43693571 - 43693683
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||||||||||||||||| ||||  ||||||||||| ||| ||||| | |||| |||||||||| ||||||||  || |||||||||||||||      
T  43693571 tttgttcttcagctctgaccaccggccatggtgcgtgagtttactcgcgcataagccattggtgcgtgaattaagtcacacatagattataaggtgcgct 43693670  T
Q  233 agttaagtcacgc 245  Q
    |||||||||||||    
T  43693671 agttaagtcacgc 43693683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 1217814 - 1217743
Alignment:
Q  191 gtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcac 262  Q
    ||||||||||||||||||||  || || || | ||||||||||||||||||||||||||| |||||||||||    
T  1217814 gtggtgcgtgacttaagtcacacaaagcttgtgaggtgcgtgagttaagtcacgcaacgtgacttaactcac 1217743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 5913121 - 5913255
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| |||||| |||| ||||||||| || || | || || ||||| ||||||||||||| |||||| || | ||||||||    
T  5913121 tttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcacagaggctcaatggtgtgtgacttaagtcacgcagagcttgtgaggtgcgt 5913220  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||||   || |||||||||||||||    
T  5913221 gagttaagtcacgcggtgtgacttaactcacgcag 5913255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 15743251 - 15743324
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcac 262  Q
    |||||||||||||||||||||| |||||| || | ||||||||||||||||||  ||  ||| |||||||||||    
T  15743251 cagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtcttgctgcgtgacttaactcac 15743324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 42182685 - 42182608
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    ||||||||||||||||| |||| | |||| || | || ||||||||||||||||||||  || |||||||||||||||    
T  42182685 cagtggtgcgtgacttaggtcacgtagagcttgtgagatgcgtgagttaagtcacgcagtgtgacttaactcacgcag 42182608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 4759213 - 4759347
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | ||||||  ||||| ||||  |||||||| ||||| | || ||||||||| |||||||||||| |||||| || | ||||||||    
T  4759213 tttgtgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcatgacttaagtcacgcagagcttgtgaggtgcgt 4759312  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    | |||||||||||   ||| |||||||| ||||||    
T  4759313 gtgttaagtcacgttgcgtgacttaacttacgcag 4759347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 3964087 - 3964008
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcag 215  Q
    ||||||| |||||| |||||| |||||| |||||||||||||| ||| ||| | ||||| |||||||||||| ||| ||||    
T  3964087 tgttcttgagctctaaccaccggccaacttgcgtgagttaactcgcggaca-gacagtgatgcgtgacttaattcacgcag 3964008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 9039690 - 9039614
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||| ||||||||||||| ||| || || | |||||||||||||||| |||||  |||  |||||||||||||    
T  9039690 cagtggtgtgtgacttaagtcacgcaaaggttgtgaggtgcgtgagttaaggcacgctgcgtggcttaactcacgca 9039614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 28704201 - 28704162
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaat 51  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  28704201 ataggtgggaatggtagtataggttataaacaccattaat 28704162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 43835370 - 43835464
Alignment:
Q  172 ttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagat-tataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||| |||||||  || |||||||||||||||||||| || ||| | ||| ||||| ||||||||||||  ||  ||| ||||||||||||||    
T  43835370 ttaactcgcgcacagaccggtggtgcgtgacttaagtcacgctgagctctattaggtgtgtgagttaagtcctgctgcgtgacttaactcacgca 43835464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 6253890 - 6253821
Alignment:
Q  196 gcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    |||||||||||||||  || |  ||||| |||||||||||||||| | ||| ||| ||||||||||||||    
T  6253890 gcgtgacttaagtcacacaaaacttatatggtgcgtgagttaagttatgcatcgtgacttaactcacgca 6253821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 43635467 - 43635426
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  43635467 ataggtgggaatggtagtataggttgtaaacaccattaatgt 43635426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 9511744 - 9511780
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacg 263  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  9511744 tgcgtgagttaagtcatgcagcgtaacttaactcacg 9511780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 10833765 - 10833717
Alignment:
Q  279 aaatcacgctgggcgcgaacaaaaaatgcagggggaagagcagaaatct 327  Q
    |||||| | ||||||| | |||||| |||||||||||||||||||||||    
T  10833765 aaatcatgatgggcgccagcaaaaagtgcagggggaagagcagaaatct 10833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 7083976 - 7084104
Alignment:
Q  131 tatttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcg 230  Q
    ||||||| ||||||||||||||||| ||||| |||| |||||||||| ||||| | |||| | ||||||||||||||||| ||| |||||||||||||||    
T  7083976 tatttgtccttcagctctgaccaccggccaaggtgcatgagttaactcgcgcataggccattagtgcgtgacttaagtcacgcatagattataaggtgcg 7084075  T
Q  231 tgagttaagtcacgcaacgtaacttaact 259  Q
      |||||||||||||  ||| ||||||||    
T  7084076 ctagttaagtcacgctgcgtgacttaact 7084104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 1172942 - 1173074
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||||||| |||| |  |||| ||||||||||||||| ||||| | ||||||||||||| |||||||||| |||||| ||||||||||||      
T  1172942 tttgttcttcagctctaaccatcgaccaaggtgcgtgagttaactggcgcataggccagtggtgcgtaacttaagtcacgcagaggttataaggtgcgct 1173041  T
Q  233 agttaagtcacgcaacgtaacttaactcacgca 265  Q
     ||||||||||||  ||| |||||||| |||||    
T  1173042 tgttaagtcacgctgcgtgacttaactaacgca 1173074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 6427364 - 6427252
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||| ||||| | |||||| ||||||||||||||||| ||| || ||||||||||||      
T  6427364 tttgttcttcagctctaatcaccggccaaggtgcgtgagttaactcgcgcataggccagttgtgcgtgacttaagtcacgcatagtttataaggtgcgct 6427265  T
Q  233 agttaagtcacgc 245  Q
    |||||||||||||    
T  6427264 agttaagtcacgc 6427252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 28784776 - 28784900
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||||||||||  |||||||||||||||||||| || | || |||||||| | ||||||||||||| ||| | ||||||||||| ||     
T  28784776 tttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcacccaggccagtggggtgtgacttaagtcacgcataaattataaggtgtgtt 28784875  T
Q  233 agttaagtcacgcaacgtaacttaa 257  Q
     ||||||||||||| ||||||||||    
T  28784876 tgttaagtcacgcagcgtaacttaa 28784900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 41758718 - 41758829
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||| | | || |||||||||||| |||||| |||||| ||||||  ||||      
T  41758718 tttgttcttcagttctgaccaccagccaacgtgcatgagttaactcgcgcataggtcaatggtgcgtgactcaagtcacgcagaggttataaaatgcgca 41758817  T
Q  233 agttaagtcacg 244  Q
    ||||||||||||    
T  41758818 agttaagtcacg 41758829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 10532873 - 10532800
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| ||||||||    
T  10532873 tttgttcttcagctctgaccaccggccaacttgcgtgagttaactcgcgcacaagccagtggtgcatgacttaa 10532800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 11125823 - 11125922
Alignment:
Q  165 gcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgc 264  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||  |||||||||||||||||||||||||   ||| |||||||| ||||    
T  11125823 gcgtgagttaactcgcgcacatgccagtgatgcatgacttaagtcacgcagag-ctataaggtgcgtgagttaagtcacgttgcgtgacttaactaacgc 11125921  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 16100942 - 16100820
Alignment:
Q  152 caccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgta 251  Q
    |||| |||||| |||||||||||||| ||||||| || | ||||||||||||||||||| ||||   ||||||||||||||||||||| ||||   | |     
T  16100942 caccggccaacttgcgtgagttaactcgcgcacaggcaaatggtgcgtgacttaagtcacgcaggacttataaggtgcgtgagttaagccacgtcgcatg 16100843  T
Q  252 acttaactcacgcagagatataa 274  Q
    |||||||||||||| || |||||    
T  16100842 acttaactcacgcaaaggtataa 16100820  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 20202617 - 20202727
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgag 234  Q
    ||||||| ||||| ||||||  |||||| |||| ||||||||| |||| || |||||||||| |||||| |||||| |||||| | ||||| ||||||||    
T  20202617 tgttcttgagctcagaccactggccaacctgcgcgagttaactcgcgcccaggccagtggtgtgtgactcaagtcacgcagagct-ataagatgcgtgag 20202715  T
Q  235 ttaagtcacgca 246  Q
    ||||||||||||    
T  20202716 ttaagtcacgca 20202727  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 1081893 - 1082023
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | |||||| | |||| ||||  |||||||| ||||| | || |||||||||||||||||||||| |||||| || | ||||||||    
T  1081893 tttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgt 1081992  T
Q  232 gagttaagtcacgcaacgtaacttaactcac 262  Q
    |||||||||| |||  ||| |||||||||||    
T  1081993 gagttaagtctcgctgcgtgacttaactcac 1082023  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 12144071 - 12143994
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||||| ||| || || | |||||||||||||||||| |||  ||| |||||||||||||||    
T  12144071 cagtggtgcgtgacttaagtcacgcaaagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcag 12143994  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 36310432 - 36310352
Alignment:
Q  188 ccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcagaga 269  Q
    |||| |||||||||||||||||| |||| || |||||   ||||||||||||||||||||||| |||||||||| |||||||    
T  36310432 ccagaggtgcgtgacttaagtcacgcag-gaatataactagcgtgagttaagtcacgcaacgtgacttaactcaagcagaga 36310352  T

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Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 266
Target Start/End: Complemental strand, 2786816 - 2786680
Alignment:
Q  131 tatttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgc 229  Q
    ||||||| |||||| | | |||||| |||||| ||||  |||||||| ||||| | || ||||||||| |||||||||||| |||||| || | ||||||    
T  2786816 tatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacgcagagcttgtgaggtgc 2786717  T
Q  230 gtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||| ||   ||  |||||||||||||||    
T  2786716 gtgagttaagtctcgttgcgcgacttaactcacgcag 2786680  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 10399270 - 10399343
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    |||||||||||| | |||||||| || ||||||| |||||||||| ||||||| || |||||| | ||||||||    
T  10399270 tttgttcttcagttttgaccaccggcaaacgtgcatgagttaactcgcgcacaagctagtggtacatgacttaa 10399343  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 18172140 - 18172273
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    ||||| |||||| | | ||||||  ||||| ||||  |||||||| ||||| | || |||||||||||||||||||||| |||||| || | | ||||||    
T  18172140 tttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataagctcagtggtgcgtgacttaagtcacgcagagcttgtgatgtgcgt 18172239  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgca 265  Q
    | ||||||| || |  ||| ||||||||||||||    
T  18172240 gtgttaagtgacactgcgtgacttaactcacgca 18172273  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 40034064 - 40034141
Alignment:
Q  189 cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgcaacgtaacttaactcacgcag 266  Q
    |||||||||||||||||||||  ||||  ||| |||||||| ||||||||||||||   ||| |||||||||| ||||    
T  40034064 cagtggtgcgtgacttaagtctcgcagtaattgtaaggtgcatgagttaagtcacgatgcgtgacttaactcatgcag 40034141  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 43147429 - 43147542
Alignment:
Q  131 tatttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgc 229  Q
    |||||||| ||||| | | |||||| |||||| |||| ||||||||| | | | | || |||||||||||||||||||||| |||||| || | || |||    
T  43147429 tatttgtttttcagtttttaccaccggccaacttgcgcgagttaactcgtgtagaggctcagtggtgcgtgacttaagtcacgcagagtttgtgagatgc 43147528  T
Q  230 gtgagttaagtcac 243  Q
    || |||||||||||    
T  43147529 gttagttaagtcac 43147542  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19043964 - 19043852
Alignment:
Q  135 tgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcaga-gattataaggtgcgtga 233  Q
    ||||||| ||||  |||||||||||||| ||| |||||||||| |||| || | || ||||| ||||||||||||| ||  | |  ||||||||||||||    
T  19043964 tgttcttgagcttagaccaccagccaacctgcatgagttaactcgcgcccaagtcaatggtgtgtgacttaagtcacgctcaggcatataaggtgcgtga 19043865  T
Q  234 gttaagtcacgca 246  Q
     |||| |||||||    
T  19043864 cttaactcacgca 19043852  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 11125922 - 11125884
Alignment:
Q  227 tgcgtgagttaagtcacgcaacgtaacttaactcacgca 265  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  11125922 tgcgttagttaagtcacgcaacgtgacttaactcacgca 11125884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 1172824 - 1172865
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  1172824 ataggtgggaatggtagtataggttgtaaacaccattaatgt 1172865  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 1974514 - 1974473
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  1974514 ataggtgggaatggtagtataggttgtaaacaccattaatgt 1974473  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 3461302 - 3461343
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  3461302 ataggtgggaatggtagtataggttgtaaacaccattaatgt 3461343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 10532970 - 10532929
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    |||||||| ||||||||||||||||||||| || ||||||||    
T  10532970 ataggtgaaaatggtagtataggttataaataccattaatgt 10532929  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 25898699 - 25898642
Alignment:
Q  149 gaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaa 206  Q
    |||||||||||||||||||||||||||||  |||  | ||||||||||  ||||||||    
T  25898699 gaccaccagccaacgtgcgtgagttaactcacgcctaggccagtggtgtatgacttaa 25898642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 40017072 - 40017113
Alignment:
Q  12 ataggtgagaatggtagtataggttataaacactattaatgt 53  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  40017072 ataggtgggaatggtagtataggttgtaaacaccattaatgt 40017113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 4080 - 3947
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| |||||||||| | |||| |||||||||||||| ||| | | || |||||||||||||||||||||| |||||||||||||| || ||    
T  4080 tttgttcttcagttctgaccaccggtcaacttgcgtgagttaactcgcggaaaggctcagtggtgcgtgacttaagtcacgcagagattataagatgtgt 3981  T
Q  232 gagttaagtcacgcaacgtaacttaactcacgca 265  Q
    ||||| ||| ||||| ||| ||||| | ||||||    
T  3980 gagtttagttacgcatcgtgacttagcacacgca 3947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 25680 - 25550
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgt 231  Q
    |||||||||||| |||||||||| |||||| |||||||||||||| ||||| | ||   ||||| |||| ||||||||| ||| ||||||||||||| ||    
T  25680 tttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctgggtggtacgtgccttaagtcacgcatagattataaggtgtgt 25581  T
Q  232 gagttaagtcacgcaacgtaacttaactcac 262  Q
    || |||| ||||||| ||| |||||||||||    
T  25580 gaattaaatcacgcagcgtgacttaactcac 25550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 3731 - 3842
Alignment:
Q  133 tttgttcttcagctctgaccaccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtcatgcagagattataaggtgcgtg 232  Q
    ||||||||| |||| |||||||| ||||| ||||||||||||||| ||||| | |||||||||| |||||||||||||  || || |||||||||| ||     
T  3731 tttgttctttagctttgaccaccggccaaggtgcgtgagttaactcgcgcataggccagtggtgtgtgacttaagtcagacaaagcttataaggtgtgtt 3830  T
Q  233 agttaagtcacg 244  Q
    || |||||||||    
T  3831 agctaagtcacg 3842  T

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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 20158 - 20061
Alignment:
Q  150 accaccagccaacgtgcgtgagttaacttgcgcacatgc-cagtggtgcgtgacttaagtcatgcagagattataaggtgcgtgagttaagtcacgca 246  Q
    |||||| |||||| ||||  |||||||| ||||| | || |||||||||||||||||||||| ||| || || | ||||||||||||||| |||||||    
T  20158 accaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaaagcttgtgaggtgcgtgagttaactcacgca 20061  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 16098 - 16166
Alignment:
Q  143 agctctgacca-ccagccaacgtgcgtgagttaacttgcgcacatgccagtggtgcgtgacttaagtca 210  Q
    ||||||||||| || |||||| |||||||||||||  ||||||| |||| ||| |||||||||||||||    
T  16098 agctctgaccaaccggccaacctgcgtgagttaacacgcgcacaggccactggagcgtgacttaagtca 16166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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