View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1409_low_5 (Length: 355)

Name: NF1409_low_5
Description: NF1409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1409_low_5
NF1409_low_5
[»] chr1 (2 HSPs)
chr1 (63-237)||(6942976-6943148)
chr1 (226-262)||(26240113-26240150)
[»] chr8 (3 HSPs)
chr8 (219-262)||(42094756-42094800)
chr8 (225-262)||(42094007-42094045)
chr8 (226-262)||(22632980-22633017)
[»] chr4 (2 HSPs)
chr4 (225-262)||(14527588-14527626)
chr4 (227-262)||(24666129-24666165)
[»] chr3 (2 HSPs)
chr3 (227-262)||(47571196-47571232)
chr3 (227-262)||(49349676-49349712)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 6943148 - 6942976
Alignment:
Q  63 gagatgaacgatgggtttcaaagattttaattagcgggaataattggagagaatgattatataccgcgtttgttttatggttggaaagtaactttttatg 162  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6943148 gagaagaacgatgggtttcaaagattttaattagcgggaataattggagagaatgattata--ccgcgtttgttttatggttggaaagtaactttttatg 6943051  T
Q  163 gatttataaggaggtgataattatcgataatgtccattcccatcaaattttatatattttttaaggtggattcta 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943050 gatttataaggaggtgataattatcgataatgtccattcccatcaaattttatatattttttaaggtggattcta 6942976  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 26240113 - 26240150
Alignment:
Q  226 aggtggattctagggt-agggatcaattaagtccctca 262  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctca 26240150  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 42094800 - 42094756
Alignment:
Q  219 ttttttaaggtggattctagggt-agggatcaattaagtccctca 262  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  42094800 ttttttaaggtgaattctagggtgagggatcaattaagtccctca 42094756  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 42094007 - 42094045
Alignment:
Q  225 aaggtggattctagggt-agggatcaattaagtccctca 262  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctca 42094045  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 22633017 - 22632980
Alignment:
Q  226 aggtggattctagggt-agggatcaattaagtccctca 262  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctca 22632980  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 14527626 - 14527588
Alignment:
Q  225 aaggtggattctagggt-agggatcaattaagtccctca 262  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctca 14527588  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 24666129 - 24666165
Alignment:
Q  227 ggtggattctagggt-agggatcaattaagtccctca 262  Q
    ||||||||||||||| |||||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctca 24666165  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 47571196 - 47571232
Alignment:
Q  227 ggtggattctagggt-agggatcaattaagtccctca 262  Q
    ||||||||||||||| |||||||||||||||||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctca 47571232  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 49349676 - 49349712
Alignment:
Q  227 ggtggattctagggt-agggatcaattaagtccctca 262  Q
    ||||||||||||||| |||||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctca 49349712  T

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