View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_high_3 (Length: 622)
Name: NF14100_high_3
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 6565541 - 6566143
Alignment:
| Q |
1 |
aattgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcg |
100 |
Q |
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| T |
6565541 |
aattgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcg |
6565640 |
T |
|
| Q |
101 |
aaagtaagaaaaactgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttg |
200 |
Q |
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| T |
6565641 |
aaagtaagaaaaactgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttg |
6565740 |
T |
|
| Q |
201 |
tgaatttcagacaaggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaagg |
300 |
Q |
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| T |
6565741 |
tgaatttcagacaaggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaagg |
6565840 |
T |
|
| Q |
301 |
atccaaacatcaaaggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccaaaagtgcttctagtagaaag |
400 |
Q |
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| T |
6565841 |
atccaaacatcaaaggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccataagtgcttctagtagaaag |
6565940 |
T |
|
| Q |
401 |
ctagtaaatgggaagcaattgcattccaaacaagattccttatcatcaataccagaagagaaatctattgaaaagaaaatggctaaagtcatcactccag |
500 |
Q |
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| T |
6565941 |
ctagtaaatgggaagcaattgcattccaaacaagattccttatcatcaataccagaagaaaaatctattgaaaagaaaatggctaaagtcatcactccag |
6566040 |
T |
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| Q |
501 |
tgaagaaatcaccaaccaaacaagaatcagctgacaagtgtgtagatcacgtgaagttgcaggtacttaacgatttccaataattactatatgatgtgcg |
600 |
Q |
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| T |
6566041 |
tgaagaaatcaccaaccaaacaagaatcagctgacaagtgtgtagatcacgtgaagttgcaggtacttaacaatttccaataattactatatgatgtgcg |
6566140 |
T |
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| Q |
601 |
aaa |
603 |
Q |
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| T |
6566141 |
aaa |
6566143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 34260974 - 34260848
Alignment:
| Q |
140 |
gagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagacaaggtttatatcaggaagctgtgtaca |
239 |
Q |
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|||||| | |||||||| || || ||||||||||| |||||| | | ||||| | ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
34260974 |
gagcttctagctgaagtggcagtgttggaggaagaagtggttaggcttgaagaacaagttgtgaatttcagacaaggtttatatcaagaagctgtttaca |
34260875 |
T |
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| Q |
240 |
tttcctccaagaggaatgcagaaaatt |
266 |
Q |
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||||||| ||||| ||||| ||||||| |
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| T |
34260874 |
tttcctcaaagagaaatgctgaaaatt |
34260848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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