View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_high_5 (Length: 587)
Name: NF14100_high_5
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 42126499 - 42125942
Alignment:
| Q |
18 |
gaaggattattgccttctttggcaacttaattgtaatgctacgcagagcaaagacttcttacaaaatgactaaaaacaggagagattattggagagagag |
117 |
Q |
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| T |
42126499 |
gaaggattattgccttctttggcaacctaattgtaatgctacgcagagcaaagactttttacaaaatgactaaaaacaggagagattattggagagagag |
42126400 |
T |
|
| Q |
118 |
actttgctttggatgatttgttgcatgtaattttcattttta-attattatgtgtagctccttcttattgtttctataacttattgggaaaaaactgcaa |
216 |
Q |
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| T |
42126399 |
actttgctttggatgatttgttgcatgtaattttcatttttttattattatgtctagctccttcttattgtttctataacttattgggaaaaaactgcaa |
42126300 |
T |
|
| Q |
217 |
tactcactcaccaaatcgtccacgcattaagtaaaatattactgaatgcgagagatgtatttaaaataatacagaacatgtggattagatcatccactgc |
316 |
Q |
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| T |
42126299 |
tactcactcaccatatcgtccac----taagtaaaatattactgaatgcgagagatgtatttaaaataatacagaacatgtggattagatcattcactgc |
42126204 |
T |
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| Q |
317 |
atgatccacacat--atagtgttgagcgcgtgaacttgtgaaaaacccaaattccaagaccacatcatatggaagaggtcttgttattgtagcagttagt |
414 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42126203 |
atgatccacacatcaatagtgttgagcgtgtgaacttgtgaaaaacccaaattctaagaccacatcatatggaagaggtcttgctattgtagcagttagt |
42126104 |
T |
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| Q |
415 |
ctttaacaatagtgtgaatgcgacaagtcaccattgcctttcactttatatgttttaatgttactttgttcgtcaaaagatggctttcattgctgataaa |
514 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42126103 |
ctttaacaatagtgtgaatgcgacaagtcactattgcctttcattttatatgttttaatgttaatttgttcgtcaaaagatggctttcattgctgatagc |
42126004 |
T |
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| Q |
515 |
tcacggttctttcaacatttcggtctctaggtatgcaagtctcataaacagcaagatgatgt |
576 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
42126003 |
tcacggttctttcaacatttcggtatctagctatgcaagtctcataaacagcaagatgatgt |
42125942 |
T |
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