View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_high_9 (Length: 502)
Name: NF14100_high_9
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 39167542 - 39167059
Alignment:
| Q |
19 |
gctattagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttgga |
118 |
Q |
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| T |
39167542 |
gctattagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttgga |
39167443 |
T |
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| Q |
119 |
catgcttgattggcttagagcaatatttggcttccaggtatgtatttcgtacacagaatatggaagaaaaagatttattgttgaccaaatttttgtatgg |
218 |
Q |
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| T |
39167442 |
catgcttgattggcttagagcaatatttggcttccaggtatgtatttcgtacacagaatatggaagaaaaagatttattgttgaccaaatttttgtatgg |
39167343 |
T |
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| Q |
219 |
cctccatcaattgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatat |
318 |
Q |
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| T |
39167342 |
cctccatcaattgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatat |
39167243 |
T |
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| Q |
319 |
aaggctacaccctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaa |
418 |
Q |
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| T |
39167242 |
aaggctacaccctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaa |
39167143 |
T |
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| Q |
419 |
cactagtcggtaattgaattcacatgttttttctctgctttccttttgattttatcattccagctcgatgatcgtgctgttgat |
502 |
Q |
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| T |
39167142 |
cactagtcggtaattgaattcacatgttttttctctgctttccttatgattttatcattccagctcgatgatcgtgctgttgat |
39167059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 43965044 - 43964907
Alignment:
| Q |
24 |
tagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttggacatgc |
123 |
Q |
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| T |
43965044 |
tagattaaggcagctgtttctgcgctttttaatactcgtggcttgaactggcctagtgcattcgagcaaactcgccagagaactggagatttggatctgc |
43964945 |
T |
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| Q |
124 |
ttgattggcttagagcaatatttggcttccaggtatgt |
161 |
Q |
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| T |
43964944 |
ttgattggctcagagccatgtttgggttccaggcatgt |
43964907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 43964785 - 43964704
Alignment:
| Q |
272 |
aggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaagg |
353 |
Q |
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| T |
43964785 |
aggaatcagagagagcatctaattttgcttcttgctaacaaccatataaggctacaccccaaacccgagcctctcaacaagg |
43964704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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