View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_low_1 (Length: 889)
Name: NF14100_low_1
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 788; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 1 - 808
Target Start/End: Complemental strand, 39167022 - 39166215
Alignment:
| Q |
1 |
tggtgcaaattcttgggacggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttatcttttgccttatgaatttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39167022 |
tggtgcaaattcttgggacggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttatcttttgccttatgaattcaa |
39166923 |
T |
|
| Q |
101 |
agaataaaatctgaaattgtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacatacagcagaggaagttgcttta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166922 |
agaataaaatctgaaattgtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacatacagcagaggaagttgcttta |
39166823 |
T |
|
| Q |
201 |
tatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcacaatgtgagtacaaatatacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166822 |
tatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcacaatgtgagtacaaatatacca |
39166723 |
T |
|
| Q |
301 |
catgtttcactatatcttgtgccacaatgtcttcgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgcacatttgcta |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166722 |
catgtttcactatatcttgtgccacaatgtctttgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgcacatttgcta |
39166623 |
T |
|
| Q |
401 |
ataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatgg |
500 |
Q |
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| T |
39166622 |
ataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatgg |
39166523 |
T |
|
| Q |
501 |
tggagatgacgaggcattcctacgaaaggttatcacacccctataccgagtaattgagaaggtgtgattttatctcacatggacattgttgtaatatctc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39166522 |
tggagatgacgaggcattcctacgaaaggttatcacacccatataccgagtaattgagaaggtgtgattttatttcacatggacattgttgtaatatctc |
39166423 |
T |
|
| Q |
601 |
aggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggctgcacactcag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39166422 |
aggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggcttcacactcag |
39166323 |
T |
|
| Q |
701 |
catggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcgtcattcat |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166322 |
catggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcgtcattcat |
39166223 |
T |
|
| Q |
801 |
tacttgac |
808 |
Q |
| |
|
|||||||| |
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|
| T |
39166222 |
tacttgac |
39166215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 833 - 879
Target Start/End: Complemental strand, 39166190 - 39166144
Alignment:
| Q |
833 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
879 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166190 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
39166144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 675 - 808
Target Start/End: Complemental strand, 5539224 - 5539091
Alignment:
| Q |
675 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
774 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
|
| Q |
775 |
ttggttcgtttcatttcgtcattcattacttgac |
808 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||| |
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| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgac |
5539091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 833 - 879
Target Start/End: Complemental strand, 5539066 - 5539020
Alignment:
| Q |
833 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
879 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5539066 |
caggtcacttgattgcttttctcttggatggcctataggtgatgatg |
5539020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 152 - 287
Target Start/End: Complemental strand, 43964353 - 43964218
Alignment:
| Q |
152 |
acagactgcctcaaggtcagccagacatacagcagaggaagttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcat |
251 |
Q |
| |
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||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| ||||| |
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| T |
43964353 |
acagacttcctcaaggtcagcaagagatacaacagagaaagttgctttatatgggcttgtatcttctcatatggggtgaagcgtccaatcttcgcttcat |
43964254 |
T |
|
| Q |
252 |
gccagagtgtctgtgctatatatttcacaatgtgag |
287 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| |
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| T |
43964253 |
gccagagtgtatatgctacatatttcacaatgtgag |
43964218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 420 - 533
Target Start/End: Complemental strand, 43964103 - 43963990
Alignment:
| Q |
420 |
tcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattc |
519 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
43964103 |
tcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattc |
43964004 |
T |
|
| Q |
520 |
ctacgaaaggttat |
533 |
Q |
| |
|
| || |||||||| |
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|
| T |
43964003 |
ttgcgcaaggttat |
43963990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 658 - 745
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
658 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
745 |
Q |
| |
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|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
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| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 833 - 879
Target Start/End: Complemental strand, 43963681 - 43963635
Alignment:
| Q |
833 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
879 |
Q |
| |
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|||| ||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
43963681 |
caggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
43963635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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