View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_low_11 (Length: 474)
Name: NF14100_low_11
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 26580224 - 26579901
Alignment:
| Q |
17 |
aattctgagtttggaagtggatttgtgaggtcaagaatgatgatgccaaggcaacaaagtaataagaggaacatgagggctccgagaatgcgatggacta |
116 |
Q |
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| T |
26580224 |
aattctgagtttggaaatggatttgtgaggtcaagaatgatgatgccaaggcaacaaagtaataagaggaacatgagggctccaagaatgcggtggacta |
26580125 |
T |
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| Q |
117 |
gttcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagtatatctcttctcttgttaaatctctcccttttaatatgagtata |
216 |
Q |
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| T |
26580124 |
gctcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagtatatctcttctcttattgaatctctcccttttaatatgagtata |
26580025 |
T |
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| Q |
217 |
gatcatctgcaccagtataataggattgtcggtttgtatgtttagattgacagtgaatttgacaaaatctcagagttaaaactttgaagaaaagttttta |
316 |
Q |
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| T |
26580024 |
gatcatcggcaccagtataataggattgtcggtttgtatgtttagattgacagtgaatttgacaaaatctcagagataaaaccctcaaataaagttttta |
26579925 |
T |
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| Q |
317 |
aaagaaattggataatttactctg |
340 |
Q |
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| T |
26579924 |
aaagaaattggataacttactctg |
26579901 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 29258758 - 29258843
Alignment:
| Q |
88 |
catgagggctccgagaatgcgatggactagttcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagta |
173 |
Q |
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| T |
29258758 |
catgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta |
29258843 |
T |
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