View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14100_low_12 (Length: 474)
Name: NF14100_low_12
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 2947094 - 2947559
Alignment:
| Q |
1 |
aatgctaaacgcacctcccatctagatgggttgaagacaagaggatcctgatatttcgcagggtttaaatgtacagctgggggacacaccatgattgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2947094 |
aatgctaaacgcacctcccatctagatgggttgaagacaagaggatcctgatatttcgcagggtttaaatgtacagctgggggacacaccatgattgccc |
2947193 |
T |
|
| Q |
101 |
atcctgctggtatggtatatcctgcacgtgttcattattgaagacaaaatgaggtcacattgtcaaatatagtgtgcttttccactattacttaaacatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2947194 |
atcctgctggtatggtatatcctgcacgtgttcattattgaagacaaaatgaggtcacattgtcaaatatagtgtgcttttccactattacttaaacatc |
2947293 |
T |
|
| Q |
201 |
aagttaccaatgcacttgaacattgaaatttgaaaatgttgtattattaaattagcaatcacatacccttaaaattaatttcccttagtgccttccggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2947294 |
aagttaccaatgcacttgaacattgaaatttgaaaattttgtattattaaattagcaatcacatacccttaaaattaatttcccttagtgccttccggaa |
2947393 |
T |
|
| Q |
301 |
gattcctggaactatatttgcaagtcttgcagtttcagttatgagctgtgcaaatcatcattcattgaatttcaaataagataaattaacacacaatgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2947394 |
gattcctggaactatatttgcaagtcttgcagtttcggttatgagctgtgcaaatcatcattcattgaatttcaaataagataaattaacacacaatgtg |
2947493 |
T |
|
| Q |
401 |
ccacattaaaaatgaagaaannnnnnnaactaacctgaaatgtaaatgtcattgatttatattctt |
466 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2947494 |
ccacattaaaaatgaagaaatttttttaactaacctgaaatgtaaatgtcattgatttatattctt |
2947559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University