View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14100_low_13 (Length: 460)

Name: NF14100_low_13
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14100_low_13
NF14100_low_13
[»] chr7 (4 HSPs)
chr7 (13-443)||(10614161-10614591)
chr7 (359-443)||(15092252-15092336)
chr7 (225-279)||(10170372-10170426)
chr7 (225-279)||(10177897-10177951)
[»] chr3 (4 HSPs)
chr3 (182-287)||(51764729-51764832)
chr3 (334-443)||(13470833-13470942)
chr3 (326-443)||(51764541-51764658)
chr3 (361-414)||(51121023-51121076)
[»] chr6 (8 HSPs)
chr6 (141-443)||(6415663-6415964)
chr6 (359-443)||(7994283-7994367)
chr6 (200-295)||(19632133-19632226)
chr6 (373-414)||(6603332-6603373)
chr6 (359-415)||(6394778-6394834)
chr6 (373-441)||(6589426-6589494)
chr6 (231-294)||(6589654-6589718)
chr6 (328-360)||(16566765-16566797)
[»] chr8 (1 HSPs)
chr8 (220-278)||(17643925-17643983)
[»] chr5 (2 HSPs)
chr5 (358-443)||(17205512-17205597)
chr5 (197-262)||(28525026-28525091)
[»] chr2 (1 HSPs)
chr2 (232-294)||(1038282-1038344)
[»] chr4 (1 HSPs)
chr4 (250-279)||(21834598-21834627)
[»] chr1 (2 HSPs)
chr1 (110-154)||(28766187-28766232)
chr1 (373-417)||(7554416-7554460)


Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 10614161 - 10614591
Alignment:
Q  13 aatatgcagcagataaaatgcttttttgttttgtttactactgacaccgcgtatacacaccattgcggcctatggcgccataatggtgggcaccgatatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  10614161 aatatgcagcagataaaatgcttttttgttttgtttactactgacaccgcgtatacacaccattgcggcctatggcgccacaatggtgggcaccgacatt 10614260  T
Q  113 ccttcacaaattgcctatggctgttgttaaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10614261 ccttcacaaattgcctatggctgttgttaaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaata 10614360  T
Q  213 ttaaactattacttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgacatctaaaaaagtaatttatgagaaaattatgaaac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10614361 ttaaactattacttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgacatttaaaaaagtaatttatgagaaaattatgaaac 10614460  T
Q  313 ttacagagttcaaactttcagaatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10614461 ttacagagttcaaactttcagaatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgac 10614560  T
Q  413 attatgagaaagttcaagtaatagttgcaaa 443  Q
    |||||||||||||||||||||||||||||||    
T  10614561 attatgagaaagttcaagtaatagttgcaaa 10614591  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 15092336 - 15092252
Alignment:
Q  359 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaa 443  Q
    ||||||||||||  |||||||||||| | |||||||||||||  ||||||||||||||| | ||| |||||||||||||||||||    
T  15092336 ctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaa 15092252  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 10170426 - 10170372
Alignment:
Q  225 ttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgacat 279  Q
    ||||| |||||| ||||| | | ||||||||||||||||||| ||||||||||||    
T  10170426 ttagggaattataatgcacaaattgatgagtaaatgcacattcgtaagttgacat 10170372  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 10177951 - 10177897
Alignment:
Q  225 ttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgacat 279  Q
    ||||| |||||| ||||| | | ||||||||||||||||||| ||||||||||||    
T  10177951 ttagggaattataatgcacaaattgatgagtaaatgcacattcgtaagttgacat 10177897  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 51764832 - 51764729
Alignment:
Q  182 ttagcattacactgtacattatataaaaatattaaactattacttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgacatct 281  Q
    |||||||||||||||||||||||||||||||||| |||  ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  51764832 ttagcattacactgtacattatataaaaatattacact--tacttggggaattatcatccatagactgatgagtaaatgcacatttgtaagttgacattt 51764735  T
Q  282 aaaaaa 287  Q
    ||||||    
T  51764734 aaaaaa 51764729  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 13470942 - 13470833
Alignment:
Q  334 aatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaa 433  Q
    ||||||||||||||||||| ||||||||||| |  ||  ||||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  13470942 aatactagtaaagaagatatccatgctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaa 13470843  T
Q  434 tagttgcaaa 443  Q
    ||||||||||    
T  13470842 tagttgcaaa 13470833  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 443
Target Start/End: Complemental strand, 51764658 - 51764541
Alignment:
Q  326 actttcagaatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcact-ccttcttctgtgacattatgagaaag 424  Q
    ||||||| ||||||||||||||||     | || |||||||||||  |||||||||| ||| ||||||||||| |||||| || ||||||||| | || |    
T  51764658 actttcaaaatactagtaaagaaggcgatcttgttctctcaattgtgtgcagttttcaaccacatgtttcactcccttctcct-tgacattatcacaatg 51764560  T
Q  425 ttcaagtaatagttgcaaa 443  Q
    ||| |||||||||||||||    
T  51764559 ttccagtaatagttgcaaa 51764541  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 51121076 - 51121023
Alignment:
Q  361 ctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacat 414  Q
    ||||||||||  |||||||||||||| ||||||||||||||| || ||||||||    
T  51121076 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 51121023  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 443
Target Start/End: Original strand, 6415663 - 6415964
Alignment:
Q  141 aaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaatattaaactattactt-aggcaattatcat 239  Q
    ||||||||| ||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||| | ||||||||||||||||| ||  |||||||||    
T  6415663 aaaaatccggcattccaccattgcgccacaatttaacaactatagcattacactgttcactatatacagatattaaactattacttcagagaattatcat 6415762  T
Q  240 gcatagactgatgagtaaatgcacatttgtaagttgacatctaaaaaagtaatttatgagaaaattatgaaacttacagagttcaaactttcag------ 333  Q
     || ||||| |||||||||   |||||||                ||||||||||   || |||||| ||||||||||||||||||| ||||||          
T  6415763 acacagactaatgagtaaacagacatttg----------------aaagtaatttcataggaaattaagaaacttacagagttcaaaatttcagcacaac 6415846  T
Q  334 --------aatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagt 425  Q
            ||||||||||||||||||| ||||||||||| | |||  ||||||| |||||| |||||||||||||  ||||||||||||||| | ||| |    
T  6415847 cctttaagaatactagtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaat 6415946  T
Q  426 tcaagtaatagttgcaaa 443  Q
    ||||||||||||||||||    
T  6415947 tcaagtaatagttgcaaa 6415964  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 7994367 - 7994283
Alignment:
Q  359 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaa 443  Q
    |||| ||| |||| |||||||||||||| ||||||||||||| || || || |||| || | |||||||||||||||||||||||    
T  7994367 ctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaa 7994283  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 19632133 - 19632226
Alignment:
Q  200 ttatataaaaatattaaactattacttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgacatctaaaaaagtaattta 295  Q
    ||||||| |||||||| || |||| ||  | |||||||||||||||| ||||||||||||| |||||  ||||||||| | |||||||||||||||    
T  19632133 ttatatacaaatattacaccattaattgaggaattatcatgcatagattgatgagtaaatgaacatt--taagttgacttttaaaaaagtaattta 19632226  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 6603373 - 6603332
Alignment:
Q  373 tgcagttttctaccgcatgtttcactccttcttctgtgacat 414  Q
    |||||||||||||| |||||||||||||||  ||||||||||    
T  6603373 tgcagttttctaccacatgtttcactcctttctctgtgacat 6603332  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 6394778 - 6394834
Alignment:
Q  359 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacatt 415  Q
    ||||||||||||  |||||||||||||| |||||| ||| || | ||||||||||||    
T  6394778 ctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatt 6394834  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 6589494 - 6589426
Alignment:
Q  373 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgca 441  Q
    |||||||||||||| ||||||||||||| || || ||||||| || | |||||| |||| ||| |||||    
T  6589494 tgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgca 6589426  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 6589718 - 6589654
Alignment:
Q  231 aattatcatgcatagactgatgagtaaatgcacatttgtaagttgaca-tctaaaaaagtaattt 294  Q
    |||||||||| | | ||| |||||||||||||||||| |||||||| | ||| ||||||||||||    
T  6589718 aattatcatgtacaaactaatgagtaaatgcacatttctaagttgaaattctgaaaaagtaattt 6589654  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 16566765 - 16566797
Alignment:
Q  328 tttcagaatactagtaaagaagatacccatgct 360  Q
    ||||||||||||||||||||||||| |||||||    
T  16566765 tttcagaatactagtaaagaagatatccatgct 16566797  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 17643983 - 17643925
Alignment:
Q  220 attacttaggcaattatcatgcatagactgatgagtaaatgcacatttgtaagttgaca 278  Q
    |||| ||||| |||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  17643983 attagttagggaattatcatgcatagattgatgagtaaatacccatttgtaagtagaca 17643925  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 17205512 - 17205597
Alignment:
Q  358 gctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaa 443  Q
    |||||||||| |  ||||||||||||||| ||||||||| ||||| ||||||||||| || | || |||| |||| ||| ||||||    
T  17205512 gctctctcaaatttatgcagttttctaccacatgtttcaatcctttttctgtgacatcattacaatgttccagtattagatgcaaa 17205597  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 28525026 - 28525091
Alignment:
Q  197 acattatataaaaatattaaactattacttaggcaattatcatgcatagactgatgagtaaatgca 262  Q
    ||||||||||| ||||  | ||||||| ||||| |||||||||||| | ||||||| |||||||||    
T  28525026 acattatataagaatacaacactattaattaggaaattatcatgcacaaactgatgtgtaaatgca 28525091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 1038344 - 1038282
Alignment:
Q  232 attatcatgcatagactgatgagtaaatgcacatttgtaagttgacatctaaa--aaagtaattt 294  Q
    ||||| ||||||||  |||||||||||| ||||||||||||||||||| ||||  ||||||||||    
T  1038344 attataatgcatag--tgatgagtaaatacacatttgtaagttgacatttaaagtaaagtaattt 1038282  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 279
Target Start/End: Complemental strand, 21834627 - 21834598
Alignment:
Q  250 atgagtaaatgcacatttgtaagttgacat 279  Q
    ||||||||||||||||||||||||||||||    
T  21834627 atgagtaaatgcacatttgtaagttgacat 21834598  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 28766232 - 28766187
Alignment:
Q  110 attccttcacaaattgcctatggctgttgt-taaaaatccgccatt 154  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||    
T  28766232 attccttcacaaattgcctatggcggttgtccaaaaatccgccatt 28766187  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 7554416 - 7554460
Alignment:
Q  373 tgcagttttctaccgcatgtttcactccttcttctgtgacattat 417  Q
    |||||||||||||| |||| |||||||| | ||||||||||||||    
T  7554416 tgcagttttctaccacatgcttcactcccttttctgtgacattat 7554460  T

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