View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14100_low_14 (Length: 435)
Name: NF14100_low_14
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 175 - 426
Target Start/End: Complemental strand, 52988699 - 52988448
Alignment:
| Q |
175 |
agccataagcattgttgctcagaaaaagctcagccccagaagtgtgcctcccagtcatgctcctcaaagaatccatcctgcacttcaaatccaagtttaa |
274 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988699 |
agccataagcgttgttgctcagaaaaagctcagccccagaagtgtgcctcccagtcatgctcctcaaagaatccatcctgcacttcaaatccaagtttaa |
52988600 |
T |
|
| Q |
275 |
ttggaaatgttaaccctctcaaaaacatggagaatcatgatcattgtcatcaaggaagctgcgacaagagtcgagatggagtccagaagcataatattga |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988599 |
ttggaaatgttaaccctctcaaaaacatggagaatcatgatcactgtcatcaaggaagctgcgacaagagtcgagatggagtccagaagcataatattga |
52988500 |
T |
|
| Q |
375 |
aaacaagtgttgttcagattttcatgatttgaatctaaatgcagaagatatt |
426 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988499 |
aaacaagttttgttcagattttcatgatttgaatctaaatgcagaagatatt |
52988448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 52988844 - 52988740
Alignment:
| Q |
18 |
gttacttctgccaagagggcacaagcatggaggaaaaagttgtaaatcgtcaaatcaacatcatgtccacaaaaatggatgtggcgacacaaacgacggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52988844 |
gttacttctgccaagagggcacaagcatggaggaaaaagttgtaaatcgtcaaatcaacatcatgtccacaaaaatggatgtggcgacacaaacgacggc |
52988745 |
T |
|
| Q |
118 |
tcctc |
122 |
Q |
| |
|
||||| |
|
|
| T |
52988744 |
tcctc |
52988740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University