View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14100_low_15 (Length: 421)
Name: NF14100_low_15
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_15 |
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| [»] scaffold0016 (6 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 33670356 - 33670058
Alignment:
| Q |
12 |
atgaattaatctagtaaacttcttctcgaaaacggataagagattccactttgatcccacaagtcttttctctttggtccaaaaaggagaaacaatgcgc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| |
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| T |
33670356 |
atgaattaatctagtaaacttcttctcgaaaacggataagagattccactttgatcccacatgtcttttctctttggtccaaaaagtagaaaccatgcgc |
33670257 |
T |
|
| Q |
112 |
cttcatattacaataagctccaagaattagatataatacgtaacctagtatagcttcaaaattttactattgaattagtaaaatattataattctataca |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33670256 |
cttcatattacaataatctccaagaattagatataatacgtaacctagtatagcttcaaaattttactattgaattagtaaaatattataattctataca |
33670157 |
T |
|
| Q |
212 |
aatattgaatccattaagataccgttacaaagctttttctctcttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33670156 |
aatattgaatccattaagataccgttacgaagctttttatctcttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact |
33670058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 65 - 294
Target Start/End: Complemental strand, 33678534 - 33678310
Alignment:
| Q |
65 |
atcccacaagtcttttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaacctagtatag |
164 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
33678534 |
atcccacacgtcttttctctttggtccaaaaaggagaaaccatgctccttcctattaaaataagctccaagaatctgatataatacgtaacttagtatag |
33678435 |
T |
|
| Q |
165 |
cttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttttctctcttgcataaag |
264 |
Q |
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||||||||| |||||||| || || ||||||| ||||||||||||||| | |||||||| ||||| |||| |||||| ||||||||||||||||||| |
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| T |
33678434 |
cttcaaaatattactatt-aagtaaaaaaatat--taattctatacaaatctaaaatccatttagatatcgtt-caaagc-ttttctctcttgcataaag |
33678340 |
T |
|
| Q |
265 |
tagagagggctttccatgtgttcatagaca |
294 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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|
| T |
33678339 |
tagagagggctttccatgtgttcattgaca |
33678310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 33670037 - 33669967
Alignment:
| Q |
335 |
ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagtttt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33670037 |
ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagtttt |
33669967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 33698925 - 33698858
Alignment:
| Q |
338 |
gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagtttt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33698925 |
gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagtttt |
33698858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 294
Target Start/End: Complemental strand, 33699188 - 33698967
Alignment:
| Q |
78 |
tttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaacctagtat-----agcttcaaaa |
172 |
Q |
| |
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|||||||||||||||||||| || || |||| |||| ||||||||||| |||||||||| | |||||||||| |||||| ||| |||||||| | |
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| T |
33699188 |
tttctctttggtccaaaaagaggagaccatgctcctttctattacaataatctccaagaatcaaatataatacgcaacctaatatcttctagcttcaaga |
33699089 |
T |
|
| Q |
173 |
ttttactattgaattagtaaaat--attataattctatacaaatattgaatccattaagataccgttacaaagctttttctctcttgcataaagtagaga |
270 |
Q |
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|||| ||||||||||||||| | | ||||||| |||||| || |||||||||||||||| || ||| ||||||| ||| ||||||||||||| || |
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| T |
33699088 |
gattaccattgaattagtaaaaataacaacaattctaaacaaatcttaaatccattaagatacccttccaa-gcttttt-tcttttgcataaagtaggga |
33698991 |
T |
|
| Q |
271 |
gggctttccatgtgttcatagaca |
294 |
Q |
| |
|
||||||||||||||||||| |||| |
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|
| T |
33698990 |
gggctttccatgtgttcattgaca |
33698967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 21117392 - 21117346
Alignment:
| Q |
246 |
ttttctctcttgcataaagtagagagggctttccatgtgttcataga |
292 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
21117392 |
ttttctcttttgcataaagtcgagagggctttccatgtgttcataga |
21117346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 21248664 - 21248704
Alignment:
| Q |
357 |
gtcccttttatcccattctttactaattgaagcaacaattc |
397 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
21248664 |
gtccctttcatcccattctttactaattgaagcaacaattc |
21248704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 21201816 - 21201773
Alignment:
| Q |
354 |
aaagtcccttttatcccattctttactaattgaagcaacaattc |
397 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
21201816 |
aaagtccattttaccccattctttactaattgaagcaacaattc |
21201773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 33678603 - 33678551
Alignment:
| Q |
12 |
atgaattaatctagtaaacttcttctcgaaaacggataagagattccactttg |
64 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||||||||||||||||| |
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|
| T |
33678603 |
atgaattaatctaggaaacttcttctcaggaaaggataagagattccactttg |
33678551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 105671 - 105518
Alignment:
| Q |
155 |
cctagtatagcttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttttctctc |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || |||||| |||| |||| ||||||||||||||||| | || |||||||||| ||||| |
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|
| T |
105671 |
cctagcatagcttcaaaattttactattgaattagtaaaaaatgataattttataaaaatcttgaatccattaagatatcctt-caaagctttt-ctctc |
105574 |
T |
|
| Q |
255 |
ttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
105573 |
ttgcataaagtagagagggctttccatgtgttcatagacacgccacatacacaact |
105518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 78 - 294
Target Start/End: Original strand, 81981 - 82196
Alignment:
| Q |
78 |
tttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaaccta--gtatagcttcaaaattt |
175 |
Q |
| |
|
||||||| |||||||||||| |||||| |||| |||| ||||||||||| |||||||||| | ||||||||| |||||| | ||||||||| | | |
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|
| T |
81981 |
tttctctctggtccaaaaagaagaaaccatgctcctttctattacaataatctccaagaatcaaatataatacacaacctaagatctagcttcaagagat |
82080 |
T |
|
| Q |
176 |
tactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttttctctcttgcataaagtagagagggct |
275 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| || |||||||||| ||||| || |||| | |||||||| ||||||||||||||||||||| |
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|
| T |
82081 |
tactattgaattagtaaaat-taataattctatacaaattttaaatccattaaaataccctt-caaaac-ttttctcttttgcataaagtagagagggct |
82177 |
T |
|
| Q |
276 |
ttccatgtgttcatagaca |
294 |
Q |
| |
|
||| |||||||||| |||| |
|
|
| T |
82178 |
ttctatgtgttcattgaca |
82196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 82238 - 82305
Alignment:
| Q |
338 |
gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagtttt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
82238 |
gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaaatttt |
82305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 89988 - 90059
Alignment:
| Q |
335 |
ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttt |
406 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||||| |
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|
| T |
89988 |
ctagaacattaaagtttataaagtctcttttatcccattctttactatttgaagcaactatcccaagttttt |
90059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 89847 - 89896
Alignment:
| Q |
246 |
ttttctctcttgcataaagtagagagggctttccatgtgttcatagacac |
295 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
89847 |
ttttctcttttgcataaagtagagaggactttccatatgttcatagacac |
89896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 105730 - 105681
Alignment:
| Q |
76 |
cttttctctttggtccaaaaaggagaaacaatgcgccttcatattacaat |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| | ||||||| |
|
|
| T |
105730 |
cttttctctttggtccgaaaaggagaaaccatgcgccttcctgttacaat |
105681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 30806 - 30855
Alignment:
| Q |
246 |
ttttctctcttgcataaagtagagagggctttccatgtgttcatagacac |
295 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
30806 |
ttttctcttttgcataaagtcgagagggatttccatgtgttcatagacac |
30855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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