View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_low_16 (Length: 397)
Name: NF14100_low_16
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 33931502 - 33931125
Alignment:
| Q |
1 |
ttcttcctgctatgaatccttactgcgcttggtggagaagatgtagaggattgaaaccgcagggactagaaacttaattgaaaaaaggggtactggaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931502 |
ttcttcctgctatgaatccttactgcgcttggtggagaagatgtataggattgaaaccgcagggactagaaacttaattgaaaaaaggggtactggaaat |
33931403 |
T |
|
| Q |
101 |
acgctgtctagcttaaaagagttcagatgccacttgggttttagcagatgcattaaaaagtgttactactattagttggcattgtaatcatcatattgta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931402 |
acgctgtctagcttaaaagagttcagatgcaacttgggttttagcagatgcattaaaaagtgttactactattagttggcattgtaatcatcatattgta |
33931303 |
T |
|
| Q |
201 |
catattctgctgctacttatgtatacatttctaccgtttgttgagaacctttatttttatgctgaactcattgttggagaacttttatgttgttaaacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931302 |
catattctgctgctacttatgtatacatttctaccgtttgttgagaacctttatttttatgctgaactcattgttggagaacttttatgttgttaaacat |
33931203 |
T |
|
| Q |
301 |
gacattgcaggagttgttagatgaactaattgttgtgtcagttttctcatgttatatatagtactggtcaagactgca |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931202 |
gacattgcaggagttgttagatgaactaattgttgtgtcagttttctcatgttatatatagtactggtcaagactgca |
33931125 |
T |
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