View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_low_22 (Length: 237)
Name: NF14100_low_22
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28607291 - 28607508
Alignment:
| Q |
1 |
cttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
100 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607291 |
cttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
28607390 |
T |
|
| Q |
101 |
accgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttgg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607391 |
accgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttgg |
28607490 |
T |
|
| Q |
201 |
ctggaaacaatacccaca |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
28607491 |
ctggaaacaatacccaca |
28607508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28612053 - 28612270
Alignment:
| Q |
1 |
cttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612053 |
cttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
28612152 |
T |
|
| Q |
101 |
accgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttgg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612153 |
accgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttgg |
28612252 |
T |
|
| Q |
201 |
ctggaaacaatacccaca |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
28612253 |
ctggaaacaatacccaca |
28612270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34906986 - 34906769
Alignment:
| Q |
1 |
cttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34906986 |
cttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
34906887 |
T |
|
| Q |
101 |
accgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttgg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34906886 |
accgtaagctataccatagctttcctatttgtagaaaaattcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttgg |
34906787 |
T |
|
| Q |
201 |
ctggaaacaatacccaca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34906786 |
ctggaaacaatacccaca |
34906769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8539065 - 8538859
Alignment:
| Q |
1 |
cttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8539065 |
cttacaccaaaagtcatgacattcagagtgtgaaacttggaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
8538966 |
T |
|
| Q |
101 |
accgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttg |
199 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| || ||| || ||||||||||||||| |
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| T |
8538965 |
accttaagctataccatagctttcctatttgtagaaaaatgcatcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttg |
8538866 |
T |
|
| Q |
200 |
gctggaa |
206 |
Q |
| |
|
||||||| |
|
|
| T |
8538865 |
gctggaa |
8538859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 2308905 - 2308773
Alignment:
| Q |
86 |
tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt |
185 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2308905 |
tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt |
2308806 |
T |
|
| Q |
186 |
agtaattgtctttggctggaaacaatacccaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
2308805 |
agtaattgtctttggctggaaacaatacccaca |
2308773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17124057 - 17123887
Alignment:
| Q |
1 |
cttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||| || ||||||||||| |||||| |
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|
| T |
17124057 |
cttacaccaaaagtcataacattcaaagtgtgaaacttggaatgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctcc |
17123958 |
T |
|
| Q |
101 |
accgtaagctatatcatagctttcctatttgtagaaa--aatgcatccttgcattaaataggtagaagact |
169 |
Q |
| |
|
||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
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|
| T |
17123957 |
accttaagctatactatagttttcctatttgtagaaaataatgcttccttgcattaaataaatagaagact |
17123887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
| Q |
103 |
cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact |
169 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
17121801 |
cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact |
17121733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 51298598 - 51298539
Alignment:
| Q |
159 |
ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccaca |
218 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||||| ||||||||| ||||| |
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|
| T |
51298598 |
ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccaca |
51298539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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