View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_low_3 (Length: 643)
Name: NF14100_low_3
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 42 - 621
Target Start/End: Original strand, 1133419 - 1133995
Alignment:
| Q |
42 |
agtagtgaaatctattagagggaaaaatcattactaactagtgctgaaaatgatcccaaaatattatcacaggtagaaaataaatttatggtatgatagg |
141 |
Q |
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| T |
1133419 |
agtagtgaaatctattagagggaaaaatcattactaactagtgctgaaaatgatcccaaaatattatcacaggtagaaaataaatttatggtatgatagg |
1133518 |
T |
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| Q |
142 |
atgaagtatgaaatgaattcctttggcatctaatggaatctggagtcttgttcatttgttttaatgagtctttgagacaatcaaggattcattacaaatg |
241 |
Q |
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| T |
1133519 |
atgaagtatgaaatgaattcctttggcatctaatggaatctggagtcttgttcatttgttttaatgagtctttgagacaatcaaggattcattacaaatg |
1133618 |
T |
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| Q |
242 |
aaattatattaaagacttcactcaaaataattgacttaaaaaggattctcttgaaatcattatactatatggagataaagatttgaaagcatttcttaat |
341 |
Q |
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| T |
1133619 |
agattatattaaagacttcactcaaaataattgacttaaaaaggattctcttgaaatcattttactatatggagataaagatttgaaagcatttcttaat |
1133718 |
T |
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| Q |
342 |
ggagataaagaagattgccttgtagtggtggtgagtatttgacgtgtaagcttaagatattcacatatcgactcaaactcataaagtaattacttttgga |
441 |
Q |
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| T |
1133719 |
ggagataaagaa---tgccttgtagtggtggtgagtatttgacgtgtaagcttaagatattcacatatcgactcaaactcataaagtaattacttttgga |
1133815 |
T |
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| Q |
442 |
tttgtaaagaatatttgtgatatatatagatatacacaccatgacttcagagaaactttgtaatcttgttttatatttgtatataggagacagtgacatt |
541 |
Q |
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| T |
1133816 |
tttgtaaagaatatttgtgatatatatagatatacacaccatgacttcagagaaactttgtaatcttgttttatatttgtatataggagacagtgacatt |
1133915 |
T |
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| Q |
542 |
ttacttgttacaaatgatgacacacaatatttcttttcaagagttgttttaatatgaaggacatgagtgatgtttatatt |
621 |
Q |
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| T |
1133916 |
ttacttgttacaaatgatgacacacaatatttcttttcaagagttgttttaatatgaaggacatgagtgatgtttatatt |
1133995 |
T |
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