View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14100_low_9 (Length: 503)
Name: NF14100_low_9
Description: NF14100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14100_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 25574329 - 25574004
Alignment:
| Q |
15 |
aaaaacaaggcatgaaaatatcgaacatgtttagttgaatgcggtgattaacattcaacaacagagcgaaagtgtagcaaaaagagtgatgaaacgaacc |
114 |
Q |
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| T |
25574329 |
aaaaacaaggcatgaaaatatcgaacatgtttagttgaatgcggtgattaacattcaacaacagagcgaaagtgtagcaaaaagagtgatgaaacgaacc |
25574230 |
T |
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| Q |
115 |
ttcaaaaagagtaagagtgtgtgcgtatggtcctatgaactgatactcgatcacgcttccgagttaagacgagtcgaatcggttaagatgaacgggtgag |
214 |
Q |
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| T |
25574229 |
ttcaaaaagagtaagagtgtgtgcgtttggtcctatgaactgatactcgatcacgcttccaagttaagacgagtcgaatcggttaagctgaacgggtgag |
25574130 |
T |
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| Q |
215 |
ggtagaatcgtcaaaatttgaatgggaatgtgagaaggaatgaagaggcattgttggtgaagtaatggaatgttagaaggagtgttgcttttgtagcttg |
314 |
Q |
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| T |
25574129 |
ggtagaatcgtcaaaatgtgaatgggaatgtgagaaggaatgaagaggcattgttggtgaagtaatggaatgtgagaaggagtgttgcttttgtagcttg |
25574030 |
T |
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| Q |
315 |
gagatgaagtacactccggcgtttcg |
340 |
Q |
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||| ||||||||||| |||||||||| |
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| T |
25574029 |
gaggtgaagtacactgcggcgtttcg |
25574004 |
T |
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