View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14101_high_1 (Length: 508)
Name: NF14101_high_1
Description: NF14101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14101_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 29 - 494
Target Start/End: Complemental strand, 43710475 - 43710004
Alignment:
| Q |
29 |
tttcagtatcatgtgccctggttggttgcgtgttttacattnnnnnnnnnnnnntctc----tcattatatgtcatataaaattattgcgtgttttacag |
124 |
Q |
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| T |
43710475 |
tttcagtatcatgtgccctggttggttgcgtgttttacattccccctacccccctctcatactcattatatgtcatataaaattattgcgtgttttacag |
43710376 |
T |
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| Q |
125 |
ctcaataattgagatggtcctaagtcctaacccttaaattgagcattggcatctcctatatatggtaaatggtataaccaccctagacttatatagtagt |
224 |
Q |
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| T |
43710375 |
ctcaataattgagatggtcctaagtcctaacccttaaattgagcattggcatctcctatatatggtaaatggtataaccaccctagacttatatagtagt |
43710276 |
T |
|
| Q |
225 |
taagtttcaatttttgaaaaataattgacacaaatttataattcaactaaatgcaagagttgataatataaatgttagatgatgctgttttaacgttttg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43710275 |
taagtttcaatttttgaaaaataattgacacaaatttataattcaactaaatgcaagagttgataatataaatgttagatgatggtgttttaacgttttg |
43710176 |
T |
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| Q |
325 |
cccaatacatatcaacaaatgataaaaagttaggaatagtga-gatgtat-cccgatagtgtgagcaactacgtttgtttggttttcaacttaatatgag |
422 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43710175 |
cccaatacatatgaacaaatgataaaaagttaggaatagtgaggatgtatccccgatagtgtgagcaactatgtttgtttggttttcaacttaatatgag |
43710076 |
T |
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| Q |
423 |
agatctccctttgaaaaatttatgctgtcaacaaatgatctttgtgtcaactttaaaaatcacattttatat |
494 |
Q |
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|| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43710075 |
agttctccctttgaaaaatttaggccgtcaacaaatgatctttgtgtcaactttaaaaatcacattttatat |
43710004 |
T |
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