View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14101_high_3 (Length: 293)
Name: NF14101_high_3
Description: NF14101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14101_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 54396099 - 54396362
Alignment:
| Q |
11 |
gaagcatagggaatgacatagaaatatgatcaactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacgtgctttacaggg |
110 |
Q |
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| T |
54396099 |
gaagcatagggaatgacatagaaatatgatcaactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacatgctttacaggg |
54396198 |
T |
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| Q |
111 |
aagaaatggcacataggagcttccccaggctttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgccca |
210 |
Q |
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| T |
54396199 |
aagaaatggcacataggagcttccccaggctttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgccca |
54396298 |
T |
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| Q |
211 |
aagcatccattatgtctccatattgaccctttagaagaactttgaagcccttactccctatgtc |
274 |
Q |
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| T |
54396299 |
aagcatccattatgtctccatattgaccctttagaagaactttgaagaccttactccctatgtc |
54396362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 42 - 274
Target Start/End: Original strand, 54381246 - 54381478
Alignment:
| Q |
42 |
aactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacgtgctttacagggaagaaatggcacataggagcttccccaggct |
141 |
Q |
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| T |
54381246 |
aactagttccctcttgttcagttggtggcctctggtgggagtggcgcccatacaatgtgctttacagggaagaaatgacacagtggagcttccccaggct |
54381345 |
T |
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| Q |
142 |
ttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtctccatattgaccctt |
241 |
Q |
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| T |
54381346 |
tcattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccatcatgtctccatattgacccct |
54381445 |
T |
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| Q |
242 |
tagaagaactttgaagcccttactccctatgtc |
274 |
Q |
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| T |
54381446 |
tagaagaactttgaagatcctactgcctatgtc |
54381478 |
T |
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