View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14101_low_2 (Length: 304)
Name: NF14101_low_2
Description: NF14101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14101_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 54396345 - 54396636
Alignment:
| Q |
1 |
gaccttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagcatagatatcctttgag |
100 |
Q |
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| T |
54396345 |
gaccttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagcatagatatcctttgag |
54396444 |
T |
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| Q |
101 |
attttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggatgttatatctggcctcagtaccaagaacactatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54396445 |
attttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtgaatgttatatctggcctcagtaccaagaacactatgaa |
54396544 |
T |
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| Q |
201 |
caaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatg |
292 |
Q |
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| T |
54396545 |
caaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatg |
54396636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 54381466 - 54381751
Alignment:
| Q |
6 |
tactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagcatagatatcctttgagatttt |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54381466 |
tactgcctatgtctaggtagtggcaatagtaaagagcataagggtaaggtctagggtgacaagctacccatttaggagcatagatatcctttgagatttc |
54381565 |
T |
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| Q |
106 |
caaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggatgttatatctggcctcagtaccaagaacactatgaacaaat |
205 |
Q |
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||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||| || ||||||||| |
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| T |
54381566 |
caaaatggtgtagttttgcaaacgcacacctgatgttgtcggatagctagttgtgtgaatgttatatctggcctcggcaccgagaacgctgtgaacaaat |
54381665 |
T |
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| Q |
206 |
tcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcat |
291 |
Q |
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||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54381666 |
tcaagcatggactctaaagaagtgggacaggccttggtctccccttttgtgggttcaaactcacattgatcaattatgtctttcat |
54381751 |
T |
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