View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14102_high_4 (Length: 326)
Name: NF14102_high_4
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_high_4 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 18342689 - 18342988
Alignment:
| Q |
16 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342689 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
18342788 |
T |
|
| Q |
116 |
tttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342789 |
tttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact |
18342888 |
T |
|
| Q |
216 |
tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342889 |
tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
18342988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 48288629 - 48288862
Alignment:
| Q |
16 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaat----tcgagttccttttggatttc |
111 |
Q |
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|||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
48288629 |
ataatacctcggatgttaatgaaactatttaagtgaaatttacctgtctcaattctcgggctattgcaaaaaaaaaaaaatcgagttccttttgaatttc |
48288728 |
T |
|
| Q |
112 |
cttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | ||| || |
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| T |
48288729 |
cttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaat |
48288823 |
T |
|
| Q |
212 |
cacttcagatctttctaaagatgaatttggtactgcttt |
250 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||| |
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| T |
48288824 |
cacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 36840497 - 36840761
Alignment:
| Q |
51 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840497 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
36840596 |
T |
|
| Q |
151 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
250 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840597 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
36840696 |
T |
|
| Q |
251 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840697 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
36840761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 315
Target Start/End: Complemental strand, 164630 - 164376
Alignment:
| Q |
61 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
164630 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
164531 |
T |
|
| Q |
161 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
164530 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
164431 |
T |
|
| Q |
261 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
164430 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattc |
164376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 277417 - 277629
Alignment:
| Q |
16 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
115 |
Q |
| |
|
||||||| || || ||||||||||||||||| || ||||| || | ||||||||| ||| || ||| ||||| ||||||||||||||| || |||| |
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| T |
277417 |
ataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgccttt |
277516 |
T |
|
| Q |
116 |
tttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact |
215 |
Q |
| |
|
|| |||||| | |||||| ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| | || ||| |
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| T |
277517 |
ttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattact |
277616 |
T |
|
| Q |
216 |
tcagatctttcta |
228 |
Q |
| |
|
|| |||||||||| |
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|
| T |
277617 |
tcggatctttcta |
277629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 315
Target Start/End: Original strand, 14249096 - 14249350
Alignment:
| Q |
61 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14249096 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
14249195 |
T |
|
| Q |
161 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
14249196 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
14249295 |
T |
|
| Q |
261 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14249296 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattc |
14249350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 1028 - 732
Alignment:
| Q |
16 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||| |
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|
| T |
1028 |
ataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttggatttccttc |
929 |
T |
|
| Q |
116 |
tttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact |
215 |
Q |
| |
|
|| |||||||| ||| || ||||| |||||||| |||||| || || || ||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
928 |
ttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagctctgatcact |
829 |
T |
|
| Q |
216 |
tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatga |
312 |
Q |
| |
|
|| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
828 |
tctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctcctatga |
732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 46699127 - 46699238
Alignment:
| Q |
204 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
304 |
ctcctatgattc |
315 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46699227 |
ctcctatgattc |
46699238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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