View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14102_high_5 (Length: 315)
Name: NF14102_high_5
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_high_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 18152956 - 18153238
Alignment:
| Q |
17 |
acccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgat |
116 |
Q |
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| T |
18152956 |
acccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgat |
18153055 |
T |
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| Q |
117 |
gaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153056 |
gaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcggg |
18153155 |
T |
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| Q |
217 |
ttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
299 |
Q |
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| T |
18153156 |
ttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
18153238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 1785780 - 1785691
Alignment:
| Q |
17 |
acccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
106 |
Q |
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| T |
1785780 |
acccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
1785691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 222749 - 222478
Alignment:
| Q |
20 |
cgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaa |
119 |
Q |
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| T |
222749 |
cgttgtcccccttgcttggctcttcctctaaccggttgttgtgtaacaagtgagtagggcccagtagaacgcccatgaattttctcatcaacttgatgaa |
222650 |
T |
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| Q |
120 |
ttaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttc |
219 |
Q |
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| T |
222649 |
ttaattttaagatataggacttccctattagaacaggttgctcaaaggggtcgcctgttcttccatcaaatattctgctttttcccgggtactcgggttc |
222550 |
T |
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| Q |
220 |
aaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctc |
291 |
Q |
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| T |
222549 |
aaatacccatggattttttgtttctttactggcttcatataattctgaaaacacaagttttcttgaagcctc |
222478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 23937245 - 23937344
Alignment:
| Q |
21 |
gttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaat |
120 |
Q |
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| T |
23937245 |
gttgtcctccttgtttcacccttcctttaaggggttgttgtgtaacaagtgcataatgtccactgaaacgtccatgtattttatcatcaacttgatgaat |
23937344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
149 |
ataacaggctgttcaaaaagattccctgttcttcca |
184 |
Q |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
179 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
252 |
Q |
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||||||| ||||||| |||| ||||||||||||| || | |||||| |||||||| ||||||| |||| |||| |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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