View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14102_low_10 (Length: 289)
Name: NF14102_low_10
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 18152983 - 18153238
Alignment:
| Q |
18 |
cctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttc |
117 |
Q |
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| T |
18152983 |
cctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttc |
18153082 |
T |
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| Q |
118 |
ctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153083 |
ctattataacaggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttg |
18153182 |
T |
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| Q |
218 |
tttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
273 |
Q |
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| T |
18153183 |
tttactggcttcatataattcagaaaacacaagttttctggaagcctcctgttcat |
18153238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 1785753 - 1785691
Alignment:
| Q |
18 |
cctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
80 |
Q |
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| T |
1785753 |
cctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatca |
1785691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 265
Target Start/End: Complemental strand, 222716 - 222478
Alignment:
| Q |
27 |
ggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataa |
126 |
Q |
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| T |
222716 |
ggttgttgtgtaacaagtgagtagggcccagtagaacgcccatgaattttctcatcaacttgatgaattaattttaagatataggacttccctattagaa |
222617 |
T |
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| Q |
127 |
caggctgttcaaaaagattccctgttcttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
226 |
Q |
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|||| || ||||| | | |||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
222616 |
caggttgctcaaaggggtcgcctgttcttccatcaaatattctgctttttcccgggtactcgggttcaaatacccatggattttttgtttctttactggc |
222517 |
T |
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| Q |
227 |
ttcatataattcagaaaacacaagttttctggaagcctc |
265 |
Q |
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| T |
222516 |
ttcatataattctgaaaacacaagttttcttgaagcctc |
222478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 23937268 - 23937344
Alignment:
| Q |
18 |
cctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccatgtattttatcatcaacttgatgaat |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23937268 |
cctttaaggggttgttgtgtaacaagtgcataatgtccactgaaacgtccatgtattttatcatcaacttgatgaat |
23937344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
123 |
ataacaggctgttcaaaaagattccctgttcttcca |
158 |
Q |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
153 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
226 |
Q |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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