View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14102_low_12 (Length: 246)
Name: NF14102_low_12
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 18342772 - 18342988
Alignment:
| Q |
19 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342772 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
18342871 |
T |
|
| Q |
119 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342872 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
18342971 |
T |
|
| Q |
219 |
actagctcctatgattc |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18342972 |
actagctcctatgattc |
18342988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 48288716 - 48288862
Alignment:
| Q |
19 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||| || |
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|
| T |
48288716 |
ccttttgaatttccttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataa |
48288811 |
T |
|
| Q |
119 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
170 |
Q |
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|
|| | ||| ||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
48288812 |
tt-gactcctaatcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 36840545 - 36840761
Alignment:
| Q |
19 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840545 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
36840644 |
T |
|
| Q |
119 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840645 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
36840744 |
T |
|
| Q |
219 |
actagctcctatgattc |
235 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36840745 |
actagctcctatgattc |
36840761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 164592 - 164376
Alignment:
| Q |
19 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164592 |
ccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacag |
164493 |
T |
|
| Q |
119 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
218 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
164492 |
ttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgatt |
164393 |
T |
|
| Q |
219 |
actagctcctatgattc |
235 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
164392 |
actagctcctatgattc |
164376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 14249134 - 14249350
Alignment:
| Q |
19 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14249134 |
ccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacag |
14249233 |
T |
|
| Q |
119 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
218 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
14249234 |
ttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgatt |
14249333 |
T |
|
| Q |
219 |
actagctcctatgattc |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14249334 |
actagctcctatgattc |
14249350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 46699127 - 46699238
Alignment:
| Q |
124 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
224 |
ctcctatgattc |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46699227 |
ctcctatgattc |
46699238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 945 - 732
Alignment:
| Q |
19 |
ccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaa |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| || ||||| |||||||| |||||| || || || ||||| |||||||||||||||||||||| |
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|
| T |
945 |
ccttttggatttccttcttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaa |
846 |
T |
|
| Q |
119 |
ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt |
218 |
Q |
| |
|
||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| || ||||| |
|
|
| T |
845 |
ttacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgatt |
746 |
T |
|
| Q |
219 |
actagctcctatga |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
745 |
actagctcctatga |
732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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