View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14102_low_2 (Length: 550)
Name: NF14102_low_2
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 202 - 550
Target Start/End: Original strand, 30415040 - 30415387
Alignment:
| Q |
202 |
atgatttaagcatccttgattaaatatatatcgagtgcagaaaaatacataacaaagagataccaaaaagagaactactaaaagctgttaaattggagct |
301 |
Q |
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| T |
30415040 |
atgatttaagcatccttgattaaatatatatcgagtgcagaaaaatacataacaaagagataccaaaa-gagaactactaaaagcggttaaattggagct |
30415138 |
T |
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| Q |
302 |
tgaaggggatgacatagctataaataagggaagattacagatttaatcatgatgaaaacagattcaaaacctagctaaatttttatttggtgttgtataa |
401 |
Q |
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| T |
30415139 |
tgaaggggatgacatagctataaataagggaagattacatatttaatcatgatgaaaacagattcaaaacctatctaaatttttatttggtgttgtataa |
30415238 |
T |
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| Q |
402 |
tcaatcatatatggaatgagaattaattcttacagtacatattttcgtctctcaaattactttcatctgcaattggtgttgatagagactatcgatagta |
501 |
Q |
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| T |
30415239 |
tcaatcatatatggaatgagaattaattcttacagtacatattttcgtctctcaaattactttcatctgcaattggtgttgatagagactatcgatagta |
30415338 |
T |
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| Q |
502 |
tgccatatgtctggatgatgaagagaatggagagttagtaaaagaattc |
550 |
Q |
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| T |
30415339 |
tgccatatgtctggatgatgaagagaatggagagttagtaaaagaattc |
30415387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 30414751 - 30414831
Alignment:
| Q |
57 |
tgtttgcatttttatttaaccattttaggaatagaatgaaataggtaatcgcacagaatatatggaagatttcaccttaca |
137 |
Q |
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| T |
30414751 |
tgtttgcatttttatttaaccattttaggaatagaatgaaataggtaatcgcacagaatatatggaagatttcaccttaca |
30414831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 30414831 - 30414875
Alignment:
| Q |
168 |
acttccatattttcctaatcagaattat-aaagctatgatttaag |
211 |
Q |
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| T |
30414831 |
acttccatattttcctaatcagaattataaaagctatgatttaag |
30414875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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