View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14102_low_3 (Length: 533)
Name: NF14102_low_3
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 54396116 - 54396636
Alignment:
| Q |
1 |
atagaaatatgatcaactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacgtgctttacagggaagaaatggcacatagg |
100 |
Q |
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| T |
54396116 |
atagaaatatgatcaactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacatgctttacagggaagaaatggcacatagg |
54396215 |
T |
|
| Q |
101 |
agcttccccaggctttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396216 |
agcttccccaggctttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtct |
54396315 |
T |
|
| Q |
201 |
ccatattgaccctttagaagaactttgaagaccttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396316 |
ccatattgaccctttagaagaactttgaagaccttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagcta |
54396415 |
T |
|
| Q |
301 |
cccatttaggagcatagatatcctttgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggatgttata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54396416 |
cccatttaggagcatagatatcctttgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtgaatgttata |
54396515 |
T |
|
| Q |
401 |
tctggcctcagtaccaagaacactatgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacat |
500 |
Q |
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| T |
54396516 |
tctggcctcagtaccaagaacactatgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacat |
54396615 |
T |
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| Q |
501 |
tgatcaattatgtctttcatg |
521 |
Q |
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| T |
54396616 |
tgatcaattatgtctttcatg |
54396636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Original strand, 54381246 - 54381751
Alignment:
| Q |
15 |
aactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacgtgctttacagggaagaaatggcacataggagcttccccaggct |
114 |
Q |
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|||||||||||| | ||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
54381246 |
aactagttccctcttgttcagttggtggcctctggtgggagtggcgcccatacaatgtgctttacagggaagaaatgacacagtggagcttccccaggct |
54381345 |
T |
|
| Q |
115 |
ttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtctccatattgaccctt |
214 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
54381346 |
tcattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccatcatgtctccatattgacccct |
54381445 |
T |
|
| Q |
215 |
tagaagaactttgaagaccttactccctatgtctaggtagtggcaatagtaaagagcataagggtaaggcctagggtgacaagctacccatttaggagca |
314 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54381446 |
tagaagaactttgaagatcctactgcctatgtctaggtagtggcaatagtaaagagcataagggtaaggtctagggtgacaagctacccatttaggagca |
54381545 |
T |
|
| Q |
315 |
tagatatcctttgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggatgttatatctggcctcagtac |
414 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| | || |
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| T |
54381546 |
tagatatcctttgagatttccaaaatggtgtagttttgcaaacgcacacctgatgttgtcggatagctagttgtgtgaatgttatatctggcctcggcac |
54381645 |
T |
|
| Q |
415 |
caagaacactatgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtc |
514 |
Q |
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| ||||| || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54381646 |
cgagaacgctgtgaacaaattcaagcatggactctaaagaagtgggacaggccttggtctccccttttgtgggttcaaactcacattgatcaattatgtc |
54381745 |
T |
|
| Q |
515 |
tttcat |
520 |
Q |
| |
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|||||| |
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| T |
54381746 |
tttcat |
54381751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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