View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14102_low_5 (Length: 345)
Name: NF14102_low_5
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14102_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 43710261 - 43709936
Alignment:
| Q |
1 |
tgaaaaataattgacacaaatttataattcaactaaatgcaagagttgataatataaatgttagatgatgctgttttaacgttttgcccaatacatatca |
100 |
Q |
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| T |
43710261 |
tgaaaaataattgacacaaatttataattcaactaaatgcaagagttgataatataaatgttagatgatggtgttttaacgttttgcccaatacatatga |
43710162 |
T |
|
| Q |
101 |
acaaatgataaaaagttaggaatagtgag-atgtatccc-gatagtgtgagcaactacgtttgtttggttttcaacttaatatgagagatctccctttga |
198 |
Q |
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| T |
43710161 |
acaaatgataaaaagttaggaatagtgaggatgtatccccgatagtgtgagcaactatgtttgtttggttttcaacttaatatgagagttctccctttga |
43710062 |
T |
|
| Q |
199 |
aaaatttatgctgtcaacaaatgatctttgtgtcaactttaaaaatcacattttatattttgttctcaaacatccacaaaatggcttgttgaaaaccaaa |
298 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43710061 |
aaaatttaggccgtcaacaaatgatctttgtgtcaactttaaaaatcacattttatattttgttctcaaacatccacaaaatggcttgttgaaaaccaaa |
43709962 |
T |
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| Q |
299 |
gaccacccctcgccaagaacatacaa |
324 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43709961 |
gaccacccctcgccaagaacatacaa |
43709936 |
T |
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