View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14102_low_9 (Length: 291)

Name: NF14102_low_9
Description: NF14102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14102_low_9
NF14102_low_9
[»] chr8 (2 HSPs)
chr8 (1-272)||(13047349-13047620)
chr8 (234-276)||(32688732-32688774)
[»] chr7 (3 HSPs)
chr7 (169-276)||(15743258-15743365)
chr7 (218-276)||(15742096-15742154)
chr7 (218-276)||(23118309-23118367)
[»] chr4 (5 HSPs)
chr4 (169-276)||(30101329-30101436)
chr4 (216-276)||(52038914-52038974)
chr4 (218-276)||(13417600-13417658)
chr4 (218-276)||(48367387-48367445)
chr4 (218-276)||(56331690-56331748)
[»] chr1 (6 HSPs)
chr1 (169-276)||(28876517-28876624)
chr1 (180-276)||(51837532-51837628)
chr1 (218-276)||(37810817-37810875)
chr1 (218-276)||(28875335-28875393)
chr1 (218-276)||(44031803-44031861)
chr1 (169-208)||(51837490-51837529)
[»] chr3 (3 HSPs)
chr3 (169-276)||(6529261-6529369)
chr3 (169-276)||(30574839-30574942)
chr3 (218-276)||(30576021-30576079)
[»] chr6 (4 HSPs)
chr6 (169-276)||(1573011-1573118)
chr6 (218-276)||(11381399-11381457)
chr6 (218-276)||(1574222-1574280)
chr6 (218-276)||(29657203-29657261)
[»] chr5 (5 HSPs)
chr5 (216-276)||(20013895-20013955)
chr5 (218-276)||(41422225-41422283)
chr5 (218-276)||(14672316-14672374)
chr5 (218-276)||(41423387-41423445)
chr5 (217-276)||(17900175-17900233)
[»] chr2 (3 HSPs)
chr2 (218-276)||(4518762-4518820)
chr2 (218-276)||(44112623-44112681)
chr2 (218-269)||(44113183-44113234)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 13047349 - 13047620
Alignment:
Q  1 tcatcaattttggcatcaaattctatggaggtttggcgttgtactgattagtgccttttcggttattatagaaactattgattttctgattacagttctg 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047349 tcatcaatttcggcatcaaattctatggaggtttggcgttgtcctgattagtgccttttcggttattatagaaactattgattttctgattacagttctg 13047448  T
Q  101 gaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtgccgaagaatcagcttctttatctcagccttgaggacaagactgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  13047449 gaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtttctttatctcagccttgaggacaagactgtt 13047548  T
Q  201 tttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatttta 272  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13047549 tttctagcagtcggtaatgttaggtgtcgggtggtattgatagggtaattgctgatgcagttagttatttta 13047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 32688774 - 32688732
Alignment:
Q  234 gtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  32688774 gtattgatagggtaactgctgatgcagtcagttattttaatat 32688732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 15743258 - 15743365
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttat 268  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || ||||||    
T  15743258 ttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttat 15743357  T
Q  269 tttaatat 276  Q
    ||||||||    
T  15743358 tttaatat 15743365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 15742096 - 15742154
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  15742096 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 15742154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 23118309 - 23118367
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||| ||||||||| ||||||| | |||||||||||||||||    
T  23118309 tgttaggtatcgggtggtattcatagggtaactgctgatccagttagttattttaatat 23118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 30101329 - 30101436
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttat 268  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || ||||||    
T  30101329 ttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttat 30101428  T
Q  269 tttaatat 276  Q
    ||||||||    
T  30101429 tttaatat 30101436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 52038974 - 52038914
Alignment:
Q  216 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||||| || ||||||||||||||||||| ||||||||| || |||||||| |||||    
T  52038974 aatgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatttaaatat 52038914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 13417600 - 13417658
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| ||||||||  || ||||||||||||||    
T  13417600 tgttaggtatcgggtggtattgatagggtaactgctgatgtagtaagttattttaatat 13417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 48367387 - 48367445
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  48367387 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 48367445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 56331690 - 56331748
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  56331690 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 56331748  T

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Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 28876517 - 28876624
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttat 268  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || ||||||    
T  28876517 ttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttat 28876616  T
Q  269 tttaatat 276  Q
    ||||||||    
T  28876617 tttaatat 28876624  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 51837532 - 51837628
Alignment:
Q  180 agccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    ||||||||||||||  ||||||||||||  |||||| ||||||||| || ||||| ||||||||||| | ||||||||| || ||||||||||||||    
T  51837532 agccttgaggacaacgctgtttttctagaggtcggtgatgttaggtatccggtggcattgatagggtgactgctgatgcagtcagttattttaatat 51837628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 37810817 - 37810875
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  37810817 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 37810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 28875335 - 28875393
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  28875335 tgttaggtatctggtggtattgatagggtgactgctgatgcagtcagttattttaatat 28875393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 44031861 - 44031803
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  44031861 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 44031803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 51837490 - 51837529
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagc 208  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  51837490 ttctttaactcagccttgaggacaaggctgtttttctagc 51837529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 6529369 - 6529261
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgc-tgatgcggttagtta 267  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||| ||||||  | |||||    
T  6529369 ttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtaactgcttgatgcaatcagtta 6529270  T
Q  268 ttttaatat 276  Q
    |||||||||    
T  6529269 ttttaatat 6529261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 30574942 - 30574839
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttat 268  Q
    ||||||| |||||||||||||||||| |||||||||||||    || |||||| ||| || ||||||||||||||||||| |||||| || || ||||||    
T  30574942 ttctttaactcagccttgaggacaaggctgtttttctagc----ggaaatgtttggtatctggtggtattgatagggtaactgctgacgcagtcagttat 30574847  T
Q  269 tttaatat 276  Q
    ||||||||    
T  30574846 tttaatat 30574839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 30576079 - 30576021
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  30576079 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 30576021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 1573118 - 1573011
Alignment:
Q  169 ttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttat 268  Q
    ||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| || |||| |||||||||||| | ||||||||| || ||||||    
T  1573118 ttctttaactcagccttgaggacaaggctgtttttctagcggccggtaatgttaggtatccggtgatattgatagggtgactgctgatgcagtcagttat 1573019  T
Q  269 tttaatat 276  Q
    ||||||||    
T  1573018 tttaatat 1573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 11381399 - 11381457
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  11381399 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 11381457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 1574280 - 1574222
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  1574280 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 1574222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 29657203 - 29657261
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| |||| |||| || ||||||||||||||    
T  29657203 tgttaggtatccggtggtattgatagggtaactgctaatgcagtcagttattttaatat 29657261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 20013955 - 20013895
Alignment:
Q  216 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||||| || |||||||||||||||||||||||||||||  | ||||||||||||||    
T  20013955 aatgttaggtatcgggtggtattgatagggtaattgctgatgcaatcagttattttaatat 20013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 41422225 - 41422283
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  41422225 tgttaggtatctggtggtattgatagggtaactgctgatgcagtaagttattttaatat 41422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 14672316 - 14672374
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  14672316 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 14672374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 41423445 - 41423387
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  41423445 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 41423387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 17900233 - 17900175
Alignment:
Q  217 atgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    ||||||||| || ||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  17900233 atgttaggtatcgggtggtattga-agggtaactgctgatgcagtcagttattttaatat 17900175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 4518762 - 4518820
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  4518762 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 4518820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 44112623 - 44112681
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 276  Q
    |||||||| || ||||| ||||||||||||| ||||||||| || ||||||||||||||    
T  44112623 tgttaggtatccggtgggattgatagggtaactgctgatgcagtcagttattttaatat 44112681  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 44113234 - 44113183
Alignment:
Q  218 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatt 269  Q
    |||||||| || ||||||||||||||||||| ||||||||| || |||||||    
T  44113234 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatt 44113183  T

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