View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14103_high_1 (Length: 349)
Name: NF14103_high_1
Description: NF14103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14103_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 1872939 - 1872619
Alignment:
| Q |
18 |
acttgattattcatttcaatccattgattgaagctgcttcactttgcattagagttccaaaagaatttggtttgctaattttgagattgtggcataatat |
117 |
Q |
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| T |
1872939 |
acttgattattcatttcaatccattgattgaagctgcttcactttgcattagagttccaaaagaatttggtttgctaattttgagattgtggcataatat |
1872840 |
T |
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| Q |
118 |
tttgatgtattattagagagaaaatatatgaaatacagttcctttctttgttcaaaaagatcttctgactccattgtatgatgaaattggatttggtgat |
217 |
Q |
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| T |
1872839 |
tttgatgtattattagagagaaaatatatgaaatacagttcctttctttgttcaaaaagatcttctgactccattgtatgatgaaattggatttggtgat |
1872740 |
T |
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| Q |
218 |
tgtaaatgttaatctgatcttatatggttatgcacagtgaaaatcttgtttatgttgaatcttgattcacagtgatgaa---tccttattcattacaatg |
314 |
Q |
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| T |
1872739 |
tgtaaatgttaatctgatcttatatggttatacacagtgaaaatcttgtttatgttgaatcttgattcactatgatgaatcctccttattcattacaatg |
1872640 |
T |
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| Q |
315 |
aatcactaactaaactttagt |
335 |
Q |
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| T |
1872639 |
aatcactaactaaactttagt |
1872619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 24420629 - 24420674
Alignment:
| Q |
293 |
tgaatccttattcattacaatgaatcactaactaaactttagtata |
338 |
Q |
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| T |
24420629 |
tgaatcctaattcattccaatgaatcactacctaaactttaatata |
24420674 |
T |
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