View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14103_high_4 (Length: 250)

Name: NF14103_high_4
Description: NF14103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14103_high_4
NF14103_high_4
[»] chr1 (1 HSPs)
chr1 (1-238)||(5130477-5130723)
[»] chr5 (11 HSPs)
chr5 (1-87)||(8677636-8677722)
chr5 (1-87)||(8644043-8644129)
chr5 (1-84)||(8636701-8636784)
chr5 (1-87)||(9074909-9074995)
chr5 (13-87)||(1600481-1600555)
chr5 (13-87)||(8535332-8535406)
chr5 (1-87)||(8548280-8548366)
chr5 (13-86)||(8528778-8528851)
chr5 (1-71)||(9003317-9003387)
chr5 (130-164)||(36551390-36551424)
chr5 (1-50)||(8641242-8641291)
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-87)||(4491-4577)
[»] chr6 (1 HSPs)
chr6 (1-87)||(16716178-16716264)
[»] chr4 (2 HSPs)
chr4 (13-86)||(9442939-9443012)
chr4 (132-164)||(49370040-49370072)
[»] chr7 (3 HSPs)
chr7 (1-61)||(35779694-35779754)
chr7 (130-164)||(46355860-46355894)
chr7 (22-87)||(48362064-48362129)
[»] chr3 (2 HSPs)
chr3 (130-164)||(26990456-26990490)
chr3 (130-164)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (130-164)||(2610832-2610866)
chr2 (130-164)||(17429294-17429328)
chr2 (130-164)||(39709205-39709239)
chr2 (130-167)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5130723 - 5130477
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaagtggcttctaaaat 100  Q
    ||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5130723 taattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaagtggcttctaaaat 5130624  T
Q  101 tttatttacccaaatgaatctgatgctccccgaccccacttagtgagatatggcttggtt---------gttgaatctgaggctcccttaaaaatcaatc 191  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         ||||||||||||||| |||||||||||||||    
T  5130623 tttatttacccaaatgaatctgatgctccccgaccccacttaatgagatatggcttggttgttgttgttgttgaatctgaggcttccttaaaaatcaatc 5130524  T
Q  192 gtaattagtttgattcataagacatgtgtgagtttcctacattactg 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5130523 gtaattagtttgattcataagacatgtgtgagtttcctacattactg 5130477  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8677722 - 8677636
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8677722 taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaag 8677636  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8644129 - 8644043
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||    
T  8644129 taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaag 8644043  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8636784 - 8636701
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggt 84  Q
    ||||||||||| ||||||||||||| ||| |||||||| | ||||||||||||||||| |||||||||||||| ||||||||||    
T  8636784 taattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9074909 - 9074995
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    |||| |||||| ||||||||||||||||| |||||||| |  |||||||||||||||| |||||||||||||| |||||||||||||    
T  9074909 taatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaag 9074995  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 1600481 - 1600555
Alignment:
Q  13 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    ||||||||||||||||| |||||||| |  ||||||| ||||||||||||||||||||||| |||||||||||||    
T  1600481 ttccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaag 1600555  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 8535406 - 8535332
Alignment:
Q  13 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    ||||||||||||||||| |||||||| || ||||||| |||||||||||||| |||||||| |||||||||||||    
T  8535406 ttccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaag 8535332  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8548280 - 8548366
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    |||||| |||| ||||||||||||| ||| |||||||| |  ||||||||||||||||||||||||||||||| ||||||| |||||    
T  8548280 taattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaag 8548366  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 8528851 - 8528778
Alignment:
Q  13 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaa 86  Q
    ||||||||||||||||| |||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  8528851 ttccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 8528778  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9003387 - 9003317
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaat 71  Q
    ||||||||||| ||||||||||||| ||| |||||||   ||| || ||||||||| |||||||| |||||    
T  9003387 taattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaat 9003317  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 36551390 - 36551424
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  36551390 ccgaccccacttagtgagataaggcttggttgttg 36551424  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8641291 - 8641242
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaagga 50  Q
    ||||||||||| ||||||||||||| ||| |||||||| | |||||||||    
T  8641291 taattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

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Target: scaffold0627 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4577 - 4491
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    ||||||||||| ||||||||||||| ||| ||||||||   |||||||||||||||||||||||| ||||||| |||||||||||||    
T  4577 taattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaag 4491  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16716264 - 16716178
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    ||||||||||| ||||||||||||| ||| ||||||||   ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  16716264 taattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaag 16716178  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 9443012 - 9442939
Alignment:
Q  13 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaa 86  Q
    ||||||||||||||||| |||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  9443012 ttccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 9442939  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 49370040 - 49370072
Alignment:
Q  132 gaccccacttagtgagatatggcttggttgttg 164  Q
    |||||||||||||| ||||||||||||||||||    
T  49370040 gaccccacttagtgggatatggcttggttgttg 49370072  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35779754 - 35779694
Alignment:
Q  1 taattccacatcttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattga 61  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||| |||||||||||||||||    
T  35779754 taattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 46355894 - 46355860
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  46355894 ccgaccccacttagtgagataaggcttggttgttg 46355860  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 48362064 - 48362129
Alignment:
Q  22 taatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 87  Q
    |||||||| |||||||| |  |||||||||| ||||| |||||| ||||| | |||||||||||||    
T  48362064 taatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaag 48362129  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 26990456 - 26990490
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  26990456 ccgaccccacttagtgagataaggcttggttgttg 26990490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 53519824 - 53519858
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  53519824 ccgaccccacttagtgagataaggcttggttgttg 53519858  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 2610832 - 2610866
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  2610832 ccgaccccacttagtgagataaggcttggttgttg 2610866  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 17429294 - 17429328
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  17429294 ccgaccccacttagtgagataaggcttggttgttg 17429328  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 39709239 - 39709205
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttg 164  Q
    |||||||||||||||| ||||||||||||||||||    
T  39709239 ccgaccccacttagtgggatatggcttggttgttg 39709205  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 33504468 - 33504505
Alignment:
Q  130 ccgaccccacttagtgagatatggcttggttgttgaat 167  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504468 ccgaccccacttagtgggataaggcttggttgttgaat 33504505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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