View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14103_low_1 (Length: 393)
Name: NF14103_low_1
Description: NF14103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14103_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 24539340 - 24538948
Alignment:
| Q |
1 |
tacatgcttactgatattgttggaaaagcttcgagattttgtgccacttatgcaacttagtgattttattctttttacactagctattattgctaacaat |
100 |
Q |
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| T |
24539340 |
tacatgcttactgatattgttggaaaagcttcgagattttgtgccacttatgcaacttagtgattttattctttttactctagctattattgctaacaat |
24539241 |
T |
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| Q |
101 |
tctttatgttggcatagcaacattttcaattcgctgtatagttt----------atctcaacttgctttgtcttggtgattaagataacttaactgattc |
190 |
Q |
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| T |
24539240 |
tctttatgttggcatagcaacattttcaattcattgtatagtttgagattctttatctcaacttgctttgtcttggtgattaagataacttaattgattc |
24539141 |
T |
|
| Q |
191 |
acattattatagtaagtgatgatcatatgaatattatttgtaaaacgttattatgcatatagaatgaaattatgcgacttggttattttctgtatctcat |
290 |
Q |
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| T |
24539140 |
aaattattatagtaagtgatgatcatatgaatattatttgtaaaacgttattatgcatatagaatgaaattatgcgacttggttattttctgtatctcat |
24539041 |
T |
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| Q |
291 |
cttagcagatagtttaggtatttgaagattcttctttttatagtcttcttgaaagtaaattttataggctttgaataactttttctgctatat |
383 |
Q |
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| T |
24539040 |
cttagcagatagtttaggtatttgaagattcttctttttatagtcttcttgaaagtaaattttataggctttgaataactttttctgctatat |
24538948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 376
Target Start/End: Original strand, 26035593 - 26035742
Alignment:
| Q |
226 |
atttgtaaaacgttattatgcatatagaatgaaattatgcgacttggttattttctgtatctcatcttagcagatagtttaggtatttgaagattcttct |
325 |
Q |
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||||| ||||| | |||||| |||||| |||||||||| |||||||| ||||| | |||||||| |||||||||||||||||||||| ||||||| | |
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| T |
26035593 |
atttggaaaacctcattatgtctatagattgaaattatgtgacttggtaattttttatatctcattatagcagatagtttaggtatttgcagattctaat |
26035692 |
T |
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| Q |
326 |
ttttatagtcttcttgaaagtaaattttataggctttgaataactttttct |
376 |
Q |
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|||| |||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
26035693 |
tttt-cagtcttgttggcagtaaattttacaggctttgaataactttttct |
26035742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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