View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14103_low_3 (Length: 308)
Name: NF14103_low_3
Description: NF14103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14103_low_3 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 41240894 - 41241186
Alignment:
| Q |
16 |
cttatctctaaaatattggtagcatttgagttgcatcttacaccattgatcaagcatggatgtgatatcttgctaatgttgagtacattattggaatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41240894 |
cttatctctaaaatattggtagcatttgagttgcatcttacaccattgatcaagcatggatgtgatatcttgctaatgttgagtacattattggaatcaa |
41240993 |
T |
|
| Q |
116 |
tagctttaaggaaactgaagaaagaatgagactctgatgataataactcacctcctgaacaaaacatgatcataaagaaagaaattagaatagaaaagtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41240994 |
tagctttaaggaaactgaagaaagaatgagactctgatgataataactcacctcctgaacaaaacatgatcataaagaaagaaattagaatagaaaagtg |
41241093 |
T |
|
| Q |
216 |
aaacattgtaaaatctattgtgtcttgcatttcttgatttgtttgattaaccttcttgttttgttaaagggtgctttgaatgaatcatggttc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41241094 |
aaacattgtaaaatctattgtgtcttgcatttcttgatttgtttgattaaccttcttgttttgttaaagggtgctttgaatgaatcatggttc |
41241186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 32650481 - 32650577
Alignment:
| Q |
122 |
taaggaaactgaagaaagaatgagactctgatgataataactcacctcctgaacaaaacatgatcataaagaaagaaattagaatagaaaagtgaaa |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| | |||||||||||| |
|
|
| T |
32650481 |
taaggaaactgaagaaagagtgagactctgatgataataactcacctcctgaacataacatgatcataaataccaaaattaggacagaaaagtgaaa |
32650577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 32650412 - 32650479
Alignment:
| Q |
20 |
tctctaaaatattggtagcatttgagttgcatcttacaccattgatcaagcatggatgtgatatcttg |
87 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32650412 |
tctctacaatatttgtagcatttgagttgcatcttacaccattgatcaagcatggatgtgatatcttg |
32650479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 32650594 - 32650685
Alignment:
| Q |
214 |
tgaaacattgtaaaatctattgtgtcttgcatttcttgatttgtttgattaa-----ccttcttgttttgttaaagggtgctttgaatgaatc |
301 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||| | |||||||||| ||||||||||| |
|
|
| T |
32650594 |
tgaaacattgcaaaatctattgtgtcttgca-ttcttgacttgtttgattaacctgtccttcttgttatattaaagggtgacttgaatgaatc |
32650685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University