View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14103_low_6 (Length: 249)

Name: NF14103_low_6
Description: NF14103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14103_low_6
NF14103_low_6
[»] chr1 (1 HSPs)
chr1 (1-238)||(5130746-5130983)
[»] chr5 (9 HSPs)
chr5 (5-132)||(8677749-8677872)
chr5 (1-120)||(9074768-9074886)
chr5 (7-108)||(8535447-8535547)
chr5 (5-115)||(8636811-8636920)
chr5 (5-131)||(8644156-8644278)
chr5 (1-115)||(8528886-8528999)
chr5 (66-113)||(8548146-8548193)
chr5 (54-116)||(8641357-8641419)
chr5 (71-120)||(1600331-1600380)
[»] chr7 (2 HSPs)
chr7 (12-115)||(48361902-48362004)
chr7 (1-86)||(35779777-35779861)
[»] chr4 (1 HSPs)
chr4 (1-115)||(9443047-9443160)
[»] chr6 (1 HSPs)
chr6 (66-112)||(16716363-16716409)
[»] scaffold0627 (1 HSPs)
scaffold0627 (66-112)||(4663-4709)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5130746 - 5130983
Alignment:
Q  1 cccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130746 cccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaa 5130845  T
Q  101 gtgttttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130846 gtgttttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattat 5130945  T
Q  201 ggaaagaacatgcatcagaaatgtaaagcaatcccttt 238  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  5130946 ggaaagaacacgcatcagaaatgtaaagaaatcccttt 5130983  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 8677749 - 8677872
Alignment:
Q  5 tgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 104  Q
    |||||||||||||||||| | | || |||||| ||||||| ||| || || ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  8677749 tgaattcgaaaaactttgaaaccatgtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgt 8677847  T
Q  105 tttaccggccaaaaacataaaccataat 132  Q
    ||||||||||   |||||||||||||||    
T  8677848 tttaccggcc---aacataaaccataat 8677872  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 9074886 - 9074768
Alignment:
Q  1 cccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||| | |||| |||||| ||| || ||||||||| ||||||||||||||| ||||||||    
T  9074886 cccatgaattcgaaaaactttgaatccatatttctcaggttcatag-aagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaa 9074788  T
Q  101 gtgttttaccggccaaaaac 120  Q
    |||||||| |||||| ||||    
T  9074787 gtgttttatcggccataaac 9074768  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8535447 - 8535547
Alignment:
Q  7 aattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttt 106  Q
    |||||||||||||| | ||| ||||||||| ||||||| ||| || |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  8535447 aattcgaaaaacttcgaatccatatttctcaggttcatagta-gataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttt 8535545  T
Q  107 ta 108  Q
    ||    
T  8535546 ta 8535547  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 8636811 - 8636920
Alignment:
Q  5 tgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 104  Q
    ||||||| |||||||||| | | |  |||||| ||||||| ||| || || ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  8636811 tgaattctaaaaactttgaaaccaagtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgt 8636909  T
Q  105 tttaccggcca 115  Q
    |||||||||||    
T  8636910 tttaccggcca 8636920  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 8644156 - 8644278
Alignment:
Q  5 tgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 104  Q
    |||||||||||||||||| |   || |||||  ||||||| ||| || || ||| |||||||||||||||| |||||||||||| ||||||||||||| |    
T  8644156 tgaattcgaaaaactttgaaagcatgtttcttgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttt 8644254  T
Q  105 tttaccggccaaaaacataaaccataa 131  Q
    ||||||||||   ||||||||||||||    
T  8644255 tttaccggcc---aacataaaccataa 8644278  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8528886 - 8528999
Alignment:
Q  1 cccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaa 100  Q
    |||||||||||||||||||||| | | |||||| || ||||| | ||| |  |||||| ||| |||||||||||  ||||||||||||||| ||||||||    
T  8528886 cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaa 8528984  T
Q  101 gtgttttaccggcca 115  Q
    |||||||| ||||||    
T  8528985 gtgttttatcggcca 8528999  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 8548193 - 8548146
Alignment:
Q  66 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggc 113  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8548193 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 8548146  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 8641357 - 8641419
Alignment:
Q  54 aaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaa 116  Q
    ||||| |||||||||||||||| | |||  |||||||| |||||||||||| |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaa 8641419  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 1600380 - 1600331
Alignment:
Q  71 atatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaac 120  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||| ||||    
T  1600380 atataacaatatggcagcaccttcttcaaagtgttgtatcggccataaac 1600331  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 48362004 - 48361902
Alignment:
Q  12 gaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccg 111  Q
    ||||| ||||||||||||||||||| |||||||  || ||  |||| || | |||||||||||| ||||||||||||||| |||||||||||||||| ||    
T  48362004 gaaaagctttgcatctatatttctcaggttcataata-gattaaacggtcgtaggaatgatataacaatatggcagcaccttcttcaaagtgttttatcg 48361906  T
Q  112 gcca 115  Q
    ||||    
T  48361905 gcca 48361902  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35779777 - 35779861
Alignment:
Q  1 cccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggca 86  Q
    |||| ||||||||||||||||| ||| ||||||||| ||||||  || ||| |||||| ||||| |||||||||| ||||||||||    
T  35779777 cccacgaattcgaaaaactttgtatccatatttctcaggttcaaagt-agataaaacaattgcatgaatgatataacaatatggca 35779861  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9443047 - 9443160
Alignment:
Q  1 cccatgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaa 100  Q
    |||||||||||||||||||||| | | |||||| || ||||| | ||| |  |||||| ||| |||||||||||  ||||||||||||||| ||||||||    
T  9443047 cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaa 9443145  T
Q  101 gtgttttaccggcca 115  Q
    |||||||| ||||||    
T  9443146 gtgttttatcggcca 9443160  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
Q  66 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 112  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg 16716409  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 4663 - 4709
Alignment:
Q  66 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 112  Q
    ||||||| || |||||  |||||||||||||||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg 4709  T

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