View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14104_high_1 (Length: 721)
Name: NF14104_high_1
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 17 - 706
Target Start/End: Complemental strand, 39396627 - 39395940
Alignment:
| Q |
17 |
ataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396627 |
ataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataac |
39396528 |
T |
|
| Q |
117 |
tttactgaatcaagatttgtccaaaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttca |
216 |
Q |
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|| ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396527 |
ttcactgaatcaagatgtgtccaaaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttca |
39396428 |
T |
|
| Q |
217 |
atagctgctgcattgttgtgtaagaaactctcaaagaagattgataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaat |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39396427 |
atagctgctgcatttttgtgtaagaaactctcaaagaagattgataagtactccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaat |
39396329 |
T |
|
| Q |
317 |
ctttcaatgtaccaaatatgaatctcattgttgtgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgacct |
416 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396328 |
ctttcaatgtaccagatatgaatctcattgtcatgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgacct |
39396229 |
T |
|
| Q |
417 |
tttagagtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaa |
516 |
Q |
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| T |
39396228 |
tttagggtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaa |
39396129 |
T |
|
| Q |
517 |
taaaatagaagaaacaaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatg |
616 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
39396128 |
taaaatagaagaaaccaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatg |
39396030 |
T |
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| Q |
617 |
tacacattaaacaaatgcacaaagtaaaacaatatgaacaatattacagtctaattgtatttagtcactgtgtaatttgcattacgtttg |
706 |
Q |
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| T |
39396029 |
tacacattaaacaaatgcacaaagtaaaacaatatgaacagtattacagtctaattgtatttagtcactgtgtaatttgcattacgtttg |
39395940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
204 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
263 |
Q |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
249 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
323 |
Q |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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