View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14104_high_5 (Length: 479)
Name: NF14104_high_5
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Original strand, 15936970 - 15937417
Alignment:
| Q |
16 |
atgcatcaaaaatcatcatcaaacagaatcatccaaaaaa-cataatcgattattttccttattcttcttcctccttccaaatttcacagtcaaattcaa |
114 |
Q |
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| T |
15936970 |
atgcatcaaaaatcatcatcaaacagaatcaaccaaaaaaacataatcgattattttccttattcttcttcctccttccaaatttcacagttaaattcca |
15937069 |
T |
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| Q |
115 |
ttataatttaaaaccagtgtatgagttagatcgagaatctttccgttaattaacaactattaatgaagcaaaatccnnnnnnnn---caagatctaaatc |
211 |
Q |
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| T |
15937070 |
tcaaaattaaaaaccagtgcatgagttagatcgagaatctttccgttaattaacaactattaatgaagcaaaatccaaaaaaaaaaacaagatctaaatc |
15937169 |
T |
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| Q |
212 |
gaaataaacctaaccagatcggaatctacaataattgaaaagcgataaaagtgaatcaagatttgaattacatagatcaagnnnnnnncggttacgatta |
311 |
Q |
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| T |
15937170 |
gaaataaacctaaccagatcggaatctacaataattgaaaagcgatgaaagtgaatcaagatttgaattacatagatcaagagaaaa-cggttacgatta |
15937268 |
T |
|
| Q |
312 |
tacctcagcggaagcaccacgagattcacgaagaagaaccttatcaagaccattgatacctttggttaacgtaaaggaagaagatgaagaaagcttttcg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15937269 |
tacctcagcggaagcaccacgagattcacgaagaagaaccttatcaagaccattgataccttttgttaacgtaaaggaagaagatgaagaaagcttttcg |
15937368 |
T |
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| Q |
412 |
ttattcattgatgatgatgataatgaaaataaaacctaatagttgaagctct |
463 |
Q |
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| T |
15937369 |
ttattcattgatgatgatg---atgaaactaaaacctaatagttgaagctct |
15937417 |
T |
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