View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14104_high_6 (Length: 476)
Name: NF14104_high_6
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Complemental strand, 13648735 - 13648291
Alignment:
| Q |
13 |
atcatcatatccaatttaattaagagaaacaaccacctaaatagtttaaacatcacttctttattcgaaacttaaggtatttgatatatggatccctata |
112 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
13648735 |
atcatcatatccaatttaatcaagagaagcaaccacctaaatagtttaaacatcacttctttattcgaagcttaagatatttgatatatggatcc-tata |
13648637 |
T |
|
| Q |
113 |
tttatatattgttcaacactcaaattttgattcaacgtgaaactcttatactcatatatgtttgacataattctaaaaataagagaagtttttgctaatg |
212 |
Q |
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| T |
13648636 |
tttatatattgttcaacactcaaattttgattcaatgtgaaactcttatactcatatatgtttgacataattctaaaaataagagaagtttttgctaatg |
13648537 |
T |
|
| Q |
213 |
aggcatggaaaaagtaatgcccttattttacgggctagttgaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcaca |
312 |
Q |
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| T |
13648536 |
aggcatggaaaaagcaatgcccttattttacgggctagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcaca |
13648437 |
T |
|
| Q |
313 |
ctcttggatgccaacttagctatatctaatgatgattttacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctat |
412 |
Q |
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|||||||||||||||||||||||||| | || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13648436 |
ctcttggatgccaacttagctatatccattgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaaccttcctat |
13648337 |
T |
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| Q |
413 |
cacaaacatccttcatatccaacccaagtttccaaacctcactcac |
458 |
Q |
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| T |
13648336 |
cacaaacatctttcatatccaacccaagtttccaaacatcactcac |
13648291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 244 - 458
Target Start/End: Complemental strand, 13659033 - 13658819
Alignment:
| Q |
244 |
gggctagttgaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcacactcttggatgccaacttagctatatctaatg |
343 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
13659033 |
gggctagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcacactcttggatgccaacttagctatatccattg |
13658934 |
T |
|
| Q |
344 |
atgattttacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaacatccttcatatccaacccaagttt |
443 |
Q |
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| T |
13658933 |
ctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaaccttcctatcacaaacatctttcatatccaacccaagttt |
13658834 |
T |
|
| Q |
444 |
ccaaacctcactcac |
458 |
Q |
| |
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|||||| |||||||| |
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| T |
13658833 |
ccaaacatcactcac |
13658819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 236 - 458
Target Start/End: Complemental strand, 13653568 - 13653346
Alignment:
| Q |
236 |
tattttacgggctagttgaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcacactcttggatgccaacttagctat |
335 |
Q |
| |
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||||||| |||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||| | ||||||||||| ||||| | || || |
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|
| T |
13653568 |
tattttatgggctagtagaccttatatactgaatcaaatcttggaggttgttgtaggaggaaccatcaggatttacactcttggaagccaaatccgccat |
13653469 |
T |
|
| Q |
336 |
atctaat-gatgattttacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaacatccttcatatccaa |
434 |
Q |
| |
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| || | | |||||| ||||||||||||| | |||||||||| |||||||||||||||||| ||||| || |||||||||||||| ||||||||||| |
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| T |
13653468 |
tt-tagtagcagattttgaaaactcctccttcttgttcaccataatatcattcaccatattctcaacaacattcctatcacaaacatctttcatatccaa |
13653370 |
T |
|
| Q |
435 |
cccaagtttccaaacctcactcac |
458 |
Q |
| |
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||||| ||||||||||||||||| |
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|
| T |
13653369 |
tccaagcttccaaacctcactcac |
13653346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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