View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14104_high_7 (Length: 327)
Name: NF14104_high_7
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 48538446 - 48538774
Alignment:
| Q |
1 |
ccattgttattttgattattactattatgattccctccattcttgtttcctccaccaccaccatttttagcctccggcaaaccaccactatttttgttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48538446 |
ccattgttattttgattattactattatgattccctccattcttgtttcctccaccaccaccatttttagcctcctgcaaaccaccactatttttgttac |
48538545 |
T |
|
| Q |
101 |
ctccaccatgattctgattatttcctccaccaccaccgccacctttctttccaccattgccatttccgccattcatttgaaccggcacaggtccaccacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48538546 |
ctccaccatgattctgattatttcctccaccaccaccgccacctttctttcctccattgccatttccgccattcatttgaaccggcacaggtccaccacc |
48538645 |
T |
|
| Q |
201 |
gccacttttc---------------tttccaccattcatgccatgaatttgaaccggaacaggtcctccaccaccaggtttctggccgtttccggcacta |
285 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
48538646 |
gccacttttctttcctccattgccatttccaccattcatgccatgaatttgaaccggaacaggtcctccaccaccaggtttctgcccgtttccgccacca |
48538745 |
T |
|
| Q |
286 |
---ccaccgttaaaattgccacccttcat |
311 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
48538746 |
ccgccgccgttaaaattgccacccttcat |
48538774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 48572773 - 48572939
Alignment:
| Q |
1 |
ccattgttattttgattattactattatgattccctccattcttgtttcctccaccaccaccatttttagcctccggcaaaccaccactatttttgttac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| || |||| |||||| |||||||||||| |
|
|
| T |
48572773 |
ccatcgttattttgattattactattat---tccctccgttcttgtttccaccaccaccaccgtttttagcttctggcatgccaccattatttttgttac |
48572869 |
T |
|
| Q |
101 |
ctccaccatgattctgattatttcctccaccaccaccgccacctttctttccaccattgccatttccgccattcat |
176 |
Q |
| |
|
||||| | |||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
48572870 |
ctccaacttgattctgattattccctccacca------ccacctttctttcctccattgccatttccaccattcat |
48572939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 48572926 - 48573029
Alignment:
| Q |
211 |
tttccaccattcatgccatgaatttgaaccggaacaggtcctccaccaccaggtttctggccgtttccggcacta---ccaccgttaaaattgccaccct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| | || ||||||||||||||||||| |
|
|
| T |
48572926 |
tttccaccattcatgccatgaatttgaaccggaacaggccctccaccaccaggtttctgcccgtttccgccaccaccgccgccgttaaaattgccaccct |
48573025 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
48573026 |
tcat |
48573029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 7657678 - 7657635
Alignment:
| Q |
113 |
tctgattatttcctccaccaccaccgccacctttctttccacca |
156 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
7657678 |
tctgattatttccgccaccaccaccaccacctttctttccacca |
7657635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University